TCONS_00065950-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065950-protein
Unique NameTCONS_00065950-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length557

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065950-protein ID=TCONS_00065950-protein|Name=TCONS_00065950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
GKSMKEVKAETQEKGDLGIVAEGCRTNQRMMFTPPPLTVGSVFKKLTEIA
KMTGHSSMAKKAEKIQSMFVACKHSEARYLIRSLGGKLRIGLAEQSVLTS
LGHAVVLTPPCQKEYPPEVLDASKTMSSEALKEKMDESALIIKTAYCELP
TYNVIIPKLLEVDVTELPKYCHITPGIPLKPMLAHPTKGIGEVMKRFDNA
EFTCEYKYDGERAQIHLLENGQINIYSRNQENNTTKYPDIIARMPKVLNE
GVKSCIIDTESVAWDQEKKQILPFQVLTTRKRKDVEANDIKVQVCVYAFD
LLYLNGESLVRQPFKKRRALLRSSFKEIEGEFVFAKAKTSSDTDEISEFL
EESIQGNCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVV
IGGFHGSGKRTGKYGGYLLACYDEENEEYQSICKAGTGFSDDDLAKHNEF
FKPHIIEKPKAYYRFGESVRPDHWFDAVQVWEVRAADLSISPVHKASVGI
VDPVKGISLRFPRFLRIRDDKKPEEATSAQQVAQFYNSQEQIKNQTSDNK
VNEEDFY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041316XLOC_041316Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065950TCONS_00065950Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012308DNA_ligase_ATP-dep_N
IPR012310DNA_ligase_ATP-dep_cent
IPR012309DNA_ligase_ATP-dep_C
IPR000977DNA_ligase_ATP-dep
IPR016059DNA_ligase_ATP-dep_CS
IPR012340NA-bd_OB-fold
Vocabulary: Molecular Function
TermDefinition
GO:0003910DNA ligase (ATP) activity
GO:0003677DNA binding
GO:0005524ATP binding
GO:0003909DNA ligase activity
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0006281DNA repair
GO:0071897DNA biosynthetic process
GO:0051103DNA ligation involved in DNA repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0051103 DNA ligation involved in DNA repair
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003909 DNA ligase activity
molecular_function GO:0003910 DNA ligase (ATP) activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012308DNA ligase, ATP-dependent, N-terminalPFAMPF04675DNA_ligase_A_Ncoord: 3..101
e-value: 2.2E-21
score: 76.9
IPR012308DNA ligase, ATP-dependent, N-terminalGENE3D1.10.3260.10coord: 1..183
e-value: 3.4E-52
score: 177.2
IPR012308DNA ligase, ATP-dependent, N-terminalSUPERFAMILY117018ATP-dependent DNA ligase DNA-binding domaincoord: 1..171
NoneNo IPR availableGENE3D2.40.50.140coord: 392..548
e-value: 4.3E-55
score: 185.6
NoneNo IPR availableGENE3D3.30.1490.70coord: 325..391
e-value: 1.8E-29
score: 101.6
NoneNo IPR availableGENE3D3.30.470.30coord: 202..324
e-value: 1.3E-45
score: 154.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 526..557
NoneNo IPR availableCDDcd07900Adenylation_DNA_ligase_I_Eukcoord: 171..388
e-value: 2.15115E-157
score: 450.469
NoneNo IPR availableCDDcd07969OBF_DNA_ligase_Icoord: 393..538
e-value: 9.66941E-92
score: 279.362
NoneNo IPR availableSUPERFAMILY56091DNA ligase/mRNA capping enzyme, catalytic domaincoord: 174..392
IPR012310DNA ligase, ATP-dependent, centralPFAMPF01068DNA_ligase_A_Mcoord: 181..385
e-value: 4.3E-67
score: 225.6
IPR012310DNA ligase, ATP-dependent, centralPROSITEPS50160DNA_LIGASE_A3coord: 287..423
score: 46.878
IPR012309DNA ligase, ATP-dependent, C-terminalPFAMPF04679DNA_ligase_A_Ccoord: 410..521
e-value: 6.4E-24
score: 84.3
IPR000977DNA ligase, ATP-dependentTIGRFAMTIGR00574TIGR00574coord: 3..536
e-value: 4.5E-171
score: 568.0
IPR016059DNA ligase, ATP-dependent, conserved sitePROSITEPS00333DNA_LIGASE_A2coord: 359..385
IPR016059DNA ligase, ATP-dependent, conserved sitePROSITEPS00697DNA_LIGASE_A1coord: 205..213
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 393..539

Blast
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BLAST of TCONS_00065950-protein vs. Swiss-Prot (Human)
Match: DNLI1 (DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1)

HSP 1 Score: 738.413 bits (1905), Expect = 0.000e+0
Identity = 338/558 (60.57%), Postives = 442/558 (79.21%), Query Frame = 0 
Query:    1 GKSMKEVKAETQEKGDLGIVAEGCRTNQRMMFTPPPLTVGSVFKKLTEIAKMTGHSSMAKKAEKIQSMFVACKHSEARYLIRSLGGKLRIGLAEQSVLTSLGHAVVLTPPCQKEYPPEVLDASKTMSSEALKEKMDESALIIKTAYCELPTYNVIIPKLLEVDVTELPKYCHITPGIPLKPMLAHPTKGIGEVMKRFDNAEFTCEYKYDGERAQIHLLENGQINIYSRNQENNTTKYPDIIARMPKVLNEGVKSCIIDTESVAWDQEKKQILPFQVLTTRKRKDVEANDIKVQVCVYAFDLLYLNGESLVRQPFKKRRALLRSSFKEIEGEFVFAKAKTSSDTDEISEFLEESIQGNCEGLMVKTLEVDATYEIAKRSHNWLKLKKDYLEGVGDTLDLVVIGGFHGSGKRTGKYGGYLLACYDEENEEYQSICKAGTGFSDDDLAKHNEFFKPHIIEKPKAYYRFGESVRPDHWFDAVQVWEVRAADLSISPVHKASVGIVDPVKGISLRFPRFLRIRDDKKPEEATSAQQVAQFYNSQEQIKNQTS-DNKVNEEDFY 557
            G+ ++ V+AE  EKGD+G+VAE  R+ QR+M  PPPLT   VF K  +IA++TG +S AKK + I+ +FVAC+HSEAR++ RSL G+LR+GLAEQSVL +L  AV LTPP Q E+PP ++DA K  ++EA K  ++E  +I+K  +CE+P  + IIP LLE  +  LP++C ++PGIPLKPMLAHPT+GI EV+KRF+ A FTCEYKYDG+RAQIH LE G++ I+SRNQE+NT KYPDII+R+PK+    V S I+DTE+VAWD+EKKQI PFQVLTTRKRK+V+A++I+VQVC+YAFDL+YLNGESLVR+P  +RR LLR +F E EGEFVFA +  + D ++I+EFLE+S++ +CEGLMVKTL+VDATYEIAKRSHNWLKLKKDYL+GVGDTLDLVVIG + G GKR G+YGG+LLA YDE++EE Q+ICK GTGFSD++L +H++  K  ++  P+ Y R   +V PDHW D   VWEV+ ADLS+SP++ A+ G+VD  KGISLRFPRF+R+R+DK+PE+AT++ QVA  Y  Q QI+NQ   D+  + ED Y
Sbjct:  363 GRQLESVRAEAAEKGDVGLVAENSRSTQRLMLPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACRHSEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQ-EFPPAMVDAGKGKTAEARKTWLEEQGMILKQTFCEVPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPMLAHPTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDASEIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDIEQIAEFLEQSVKDSCEGLMVKTLDVDATYEIAKRSHNWLKLKKDYLDGVGDTLDLVVIGAYLGRGKRAGRYGGFLLASYDEDSEELQAICKLGTGFSDEELEEHHQSLKALVLPSPRPYVRIDGAVIPDHWLDPSAVWEVKCADLSLSPIYPAARGLVDSDKGISLRFPRFIRVREDKQPEQATTSAQVACLYRKQSQIQNQQGEDSGSDPEDTY 919
The following BLAST results are available for this feature:
BLAST of TCONS_00065950-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNLI10.000e+060.57DNA ligase 1 OS=Homo sapiens GN=LIG1 PE=1 SV=1[more]
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