TCONS_00065720-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065720-protein
Unique NameTCONS_00065720-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065720-protein ID=TCONS_00065720-protein|Name=TCONS_00065720-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MSNSTSIVPLVLWGRKQPAHTVSCIACTYDQKTIITGTVQGQLGIWDLCH
TEGSGLKIVPRNLLFAHGAEVISIACAPDGNLEHPNIVSLSSNGELCVWD
IEDGLCLTINQIPGKHTSITSVQISKGNIKEWRLVLHGMYNDLYVLDSLT
LQVLYSLKSRMSPNWMSTVCVIRPTGTRTKDDVLIGITVSNCLKVWTLKA
SSENKGETVYEEESKTLDCLKAKCLCVNPFTQRTALIISSNTWQLFNAGD
FSFLAALPAPDKVPLKKGDFVATNRVLIWNKAGKAYLYKLPSRYLLGSEQ
IDTHLSEKTARTPALLCEFSGSPGQDCTDFPMFFSYWRRGPYYKLLIQGL
NGGVRVWKVPDSELEDQQLSKLQRMDSKTSEVTISDEGVRKTVLLEESSG
RVVEVNASCLLKDVWEESRPSGLX
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041172XLOC_041172Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065720TCONS_00065720Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.130.10.150coord: 11..69
e-value: 8.7E-5
score: 21.5
coord: 70..193
e-value: 1.3E-11
score: 43.9
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 194..405
e-value: 1.6E-4
score: 20.0
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 87..101
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 15..109
score: 9.362
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 20..366

Blast
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BLAST of TCONS_00065720-protein vs. Swiss-Prot (Human)
Match: WDR7 (WD repeat-containing protein 7 OS=Homo sapiens GN=WDR7 PE=1 SV=2)

HSP 1 Score: 248.054 bits (632), Expect = 1.119e-72
Identity = 139/380 (36.58%), Postives = 224/380 (58.95%), Query Frame = 0 
Query:    1 MSNSTSIVPLVLWGRKQPAHTVSCIACTYDQKTIITGTVQGQLGIWDLCHTEGSGLKIVPRNLLFAHGAEV--ISIACAPDGNLEHPNIVSLSSNGELCVWDIEDGLCLTINQIPGKHTSITSVQISKGNIKEWRLVLHGMYNDLYVLDSLTLQVLYSLKSRMSPNWMSTVCVIRPTGTRTKDDVLIGITVSNCLKVW--TLKASSENKGETVYEEESKTLDCLKAKCLCVNPFTQRTALIISSNTWQLFNAGDFSFLAALPAPDKVPLKKGDFVATNRVLIWNKAGKAYLYKLPSRYLLGSEQIDTHLSEKTAR----TPALLCEFSGSPGQDCTDFPMFFSYWRRGPYYKLLIQGLNGG-VRVWKVPDSELEDQQLSK 371
            M+ ++ ++P+VLWGRK P H +S +  T D  TI+TG   GQ+ +WDL       L+I PR LLF H A +  +S ACA     +   IVS S +GE+C+WD+ DG C+   ++   HT I   Q S GN +E RL+ HG Y ++ V+D+ +L+VLYSL S++SP+W+S++ +IR    RT++D ++ ++V+  LKVW  T + S     E ++EEESK + C   + +    FTQR+ L++ S  W++F+AGD+S L + P+ +      GDFV++++V+IW + G++Y+YKLP+  L  S+   + + +           +L +        C     FF Y  R  ++KLLIQG + G + +W + D+   D+Q S+
Sbjct:    1 MAGNSLVLPIVLWGRKAPTHCISAVLLTDDGATIVTGCHDGQICLWDL----SVELQINPRALLFGHTASITCLSKACASS---DKQYIVSASESGEMCLWDVSDGRCIEFTKLACTHTGIQFYQFSVGNQREGRLLCHGHYPEILVVDATSLEVLYSLVSKISPDWISSMSIIR--SHRTQEDTVVALSVTGILKVWIVTSEISDMQDTEPIFEEESKPIYCQNCQSISFCAFTQRSLLVVCSKYWRVFDAGDYSLLCSGPSENGQTWTGGDFVSSDKVIIWTENGQSYIYKLPASCLPASDSFRSDVGKAVENLIPPVQHILLDRKDKELLICPPVTRFF-YGCREYFHKLLIQGDSSGRLNIWNISDT--ADKQGSE 368
The following BLAST results are available for this feature:
BLAST of TCONS_00065720-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR71.119e-7236.58WD repeat-containing protein 7 OS=Homo sapiens GN=... [more]
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