TCONS_00065711-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065711-protein
Unique NameTCONS_00065711-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length175

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065711-protein ID=TCONS_00065711-protein|Name=TCONS_00065711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=175bp
FFRRCSKGFDLAISRDSDQNIQKDSRAVNPEFFSIFFLNLFLICFNHSLA
MLKPKVLSEVLGQANSDGVISTMLLNNEGSLLAYAGSNVNKDSKITAAVA
SNIWGAYEKGGKMAFNNEGLRVMFMDCEEGKVAVTKISAVLLCMYAQPTV
GLGMLKFKMEKLAEYLHEPLNNSLA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041168XLOC_041168Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065711TCONS_00065711Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004942Roadblock/LAMTOR2_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004942Roadblock/LAMTOR2 domainSMARTSM00960Robl_LC7_a_2coord: 57..146
e-value: 8.6E-6
score: 35.2
IPR004942Roadblock/LAMTOR2 domainPFAMPF03259Robl_LC7coord: 63..145
e-value: 2.4E-11
score: 43.2
NoneNo IPR availableGENE3D3.30.450.30coord: 51..175
e-value: 9.6E-30
score: 102.4
NoneNo IPR availableSUPERFAMILY103196Roadblock/LC7 domaincoord: 51..168

Blast
[Close]
BLAST of TCONS_00065711-protein vs. Swiss-Prot (Human)
Match: LTOR2 (Ragulator complex protein LAMTOR2 OS=Homo sapiens GN=LAMTOR2 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.404e-49
Identity = 70/120 (58.33%), Postives = 95/120 (79.17%), Query Frame = 0 
Query:   51 MLKPKVLSEVLGQANSDGVISTMLLNNEGSLLAYAGSNVNKDSKITAAVASNIWGAYEKGGKMAFNNEGLRVMFMDCEEGKVAVTKISAVLLCMYAQPTVGLGMLKFKMEKLAEYLHEPL 170
            ML+PK L++VL QAN+ GV ST+LLNNEGSLLAY+G   + D+++TAA+ASNIW AY++ G  AFN + L+ + MDC EG+VA+T+++ +LLCMYA+ TVG GMLK K + L +YL EPL
Sbjct:    1 MLRPKALTQVLSQANTGGVQSTLLLNNEGSLLAYSGYG-DTDARVTAAIASNIWAAYDRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLEEPL 119
The following BLAST results are available for this feature:
BLAST of TCONS_00065711-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LTOR24.404e-4958.33Ragulator complex protein LAMTOR2 OS=Homo sapiens ... [more]
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