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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00065651-protein ID=TCONS_00065651-protein|Name=TCONS_00065651-protein|organism=Clytia hemisphaerica|type=polypeptide|length=477bp
MADTSESELIVVQPLSPPNLPENADVSIGEQNNNIGSNEGAGDQKNMLED
FTTIASPMPMTIVPCFVCGDRSSGRHYGVLTCDGCRGFFKRSVRRGVGYH
CRDKGRCVVNLSRRNQCQSCRFKKCLSVGMRKEAVQHERAPRNKKGGQTP
DRPNEFSPYPPQIVYHRVPVSGDVAELPVTCSNIPPAAQRVPPTPLPTQR
PKPPQVFVNTPKELYEVCARLLYEAISWARNIPTFSQLPLDDQALLLEYS
WSEIFLLNLAQLNIPLGMETMIKLTQQSKEYLNDKSDINKDTLNELVHIQ
SVVFKLKTLNMSSAEYSCVKAIVLFKPDLRRIKSRQHIENLQEQAQLRLL
DSVMVKGPRARFGKILLKLSLLGEVSPSFIEKCFFKGGLENISDEFCSSS
TESNSNQSDMISTLKNQSEKTPVDRNQSEAITPENNKSISQSEGEKVNGD
QSKDLNFFNHEIKQEVEDIVQVVASET Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043565 | sequence-specific DNA binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | zinc ion binding |
| GO:0003707 | steroid hormone receptor activity |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
| GO:0043401 | steroid hormone mediated signaling pathway |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| biological_process |
GO:0043401 |
steroid hormone mediated signaling pathway |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003677 |
DNA binding |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003707 |
steroid hormone receptor activity |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PRINTS | PR00047 | STROIDFINGER | coord: 114..122
score: 60.78
coord: 81..96
score: 51.19
coord: 65..81
score: 58.27
coord: 122..130
score: 62.97 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | SMART | SM00399 | c4gold | coord: 62..133
e-value: 3.0E-31
score: 119.8 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PFAM | PF00105 | zf-C4 | coord: 64..132
e-value: 7.9E-28
score: 96.6 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS00031 | NUCLEAR_REC_DBD_1 | coord: 65..91 |
| IPR001628 | Zinc finger, nuclear hormone receptor-type | PROSITE | PS51030 | NUCLEAR_REC_DBD_2 | coord: 62..137
score: 19.762 |
| IPR001723 | Nuclear hormone receptor | PRINTS | PR00398 | STRDHORMONER | coord: 238..254
score: 45.52
coord: 364..381
score: 29.8
coord: 126..136
score: 55.8
coord: 217..238
score: 29.58
coord: 309..324
score: 36.56 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | SMART | SM00430 | holi | coord: 216..376
e-value: 8.2E-27
score: 105.1 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | PFAM | PF00104 | Hormone_recep | coord: 201..385
e-value: 1.1E-27
score: 96.9 |
| IPR000536 | Nuclear hormone receptor, ligand-binding domain | SUPERFAMILY | 48508 | Nuclear receptor ligand-binding domain | coord: 131..388 |
| None | No IPR available | GENE3D | 1.10.565.10 | | coord: 125..398
e-value: 2.1E-52
score: 177.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 398..453 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..20 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 135..158 |
| None | No IPR available | CDD | cd07164 | NR_DBD_PNR_like_1 | coord: 65..142
e-value: 2.72903E-48
score: 161.093 |
| None | No IPR available | SUPERFAMILY | 57716 | Glucocorticoid receptor-like (DNA-binding domain) | coord: 61..145 |
| IPR013088 | Zinc finger, NHR/GATA-type | GENE3D | 3.30.50.10 | | coord: 60..124
e-value: 2.6E-29
score: 100.8 |
Blast
BLAST of TCONS_00065651-protein vs. Swiss-Prot (Human)
Match: NR2E1 (Nuclear receptor subfamily 2 group E member 1 OS=Homo sapiens GN=NR2E1 PE=1 SV=1) HSP 1 Score: 230.335 bits (586), Expect = 3.805e-71 Identity = 141/366 (38.52%), Postives = 200/366 (54.64%), Query Frame = 0
Query: 63 VPCFVCGDRSSGRHYGVLTCDGCRGFFKRSVRRGVGYHCR--DKGRCVVNLSRRNQCQSCRFKKCLSVGMRKEAVQHERAPRN---------------KKGGQTPDRPNEFSPYPP--QIVYHRVPVSGDVAELPVTCSNIPPAAQRVPPTPLPTQRPKPPQVFVNTPKELYEV--------CARLLYEAISWARNIPTFSQLPLDDQALLLEYSWSEIFLLNLAQLNIPLGMETMIKLTQQSKEYLNDKSDINKDTLNELVHIQSVVFKLKTLNMSSAEYSCVKAIVLFKP-------DLRRIKSRQHIENLQEQAQLRLLDSVMVKGPR--ARFGKILLKLSLLGEVSPSFIEKCFFKGGLENI 392
+PC VCGDRSSG+HYGV CDGC GFFKRS+RR Y C+ ++G C V+ + RNQC++CR KKCL V M K+AVQHER PR ++ G P+ P P V P ++A + T P Q + PT PK P TP LYEV ARLL+ +I WA+++P FS L L DQ +LLE +W E+F+L +AQ IP+ T++ ++ + + D +NK ++E+ +Q VV + + L + + E++C+K IV FK +LR ++ I LQ++AQL L + + P RFGK+LL L L +SPS IE+ FFK + N+
Sbjct: 14 IPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTT-----PERQTLVSLAQPT--PKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDN-TDSQKLNK-IISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNV 370
The following BLAST results are available for this feature:
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