opsin 7 (polypeptide) - C. hemisphaerica

Overview


Name	opsin 7
Unique Name	TCONS_00065540-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	324

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065540-protein ID=TCONS_00065540-protein|Name=opsin 7|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
MGANDGLIFMYLITPTSIILNIMVIVTLRKGFKNEPTNVRFTLLNSLSIS
ELFVSVVGFSLQTFFKTHDACIVAGHVVACFSLVSLTHMVSLTVERFLAV
KYPFKSEDWLISRKVIVAFLVPTWLYGFVWGSLFNMIGWGAIIYESKETH
RCSIDFISTDPIRKSYVYCLLVFCYIIPIITTISFFLIIKRELHKMRQFI
ADNLGEDSKISKDTVKEEKRFSILVAVMLVCFLISWTPYAISVFYWKIKG
NIKDTVFFDMCAYFGKTSSLWNPIIYFFVYKKFRTAFLRWCPFTRNWVQR
IEPTHEQKATGHSQPLKDITNTNF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041071	XLOC_041071	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065540	TCONS_00065540	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 258..284 score: 32.08 coord: 78..100 score: 21.08 coord: 40..61 score: 19.78 coord: 167..190 score: 15.13 coord: 221..245 score: 23.3
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 21..276 e-value: 5.0E-23 score: 81.6
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 84..100
None	No IPR available	GENE3D	1.20.1070.10		coord: 6..323 e-value: 7.9E-42 score: 142.7
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 8..308
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 20..276 score: 24.665

Blast

[Close]

BLAST of opsin 7 vs. Swiss-Prot (Human)
Match: OPSD (Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 7.226e-18
Identity = 82/318 (25.79%), Postives = 147/318 (46.23%), Query Frame = 0

Query:    9 FMYLITPTSIILNIMVI-VTLRKGFKNEPTNVRFTLLNSLSISELFVSVVGFSLQTFFKTHD-------ACIVAGHVVACFSLVSLTHMVSLTVERFLAVKYPFKSEDWLISRKVI-VAFLVPTWLYGFVWGSLFNMIGWGAIIYESKETHRCSIDFISTDPI--RKSYVYCLLVFCYIIPIITTISFFLIIKRELHKMRQFIADNLGEDSKISKDTVKEEKRFSILVAVMLVCFLISWTPYAISVFY-WKIKGNIKDTVFFDMCAYFGKTSSLWNPIIYFFVYKKFRTAFLRWCPFTRNWVQRIEPTHEQKATGHSQ 314
            +M+L+      +N + + VT++   K   T + + LLN L++++LF+ + GF+   +   H         C + G        ++L  +V L +ER++ V  P  +  +  +  ++ VAF   TW+      +   + GW   I E  +   C ID+ +  P    +S+V  + V  + IP+I  I FF       +    F         + S  T K EK  + +V +M++ FLI W PYA   FY +  +G+    +F  + A+F K+++++NP+IY  + K+FR   L      +N +   E +     T  SQ
Sbjct:   43 YMFLLIVLGFPINFLTLYVTVQH--KKLRTPLNYILLN-LAVADLFMVLGGFTSTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAF---TWVMALAC-AAPPLAGWSRYIPEGLQC-SCGIDYYTLKPEVNNESFVIYMFVVHFTIPMI--IIFFC------YGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWVPYASVAFYIFTHQGSNFGPIFMTIPAFFAKSAAIYNPVIYIMMNKQFRNCMLTTICCGKNPLGDDEASATVSKTETSQ 344

The following BLAST results are available for this feature:

BLAST of opsin 7 vs. Swiss-Prot (Human)

BLAST of opsin 7 vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OPSD	7.226e-18	25.79	Rhodopsin OS=Homo sapiens GN=RHO PE=1 SV=1	[more]

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opsin 7 (polypeptide) - C. hemisphaerica