unclassified Wnt ligand X1B (polypeptide) - C. hemisphaerica

Overview


Name	unclassified Wnt ligand X1B
Unique Name	TCONS_00065525-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	404

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00065525-protein ID=TCONS_00065525-protein|Name=unclassified Wnt ligand X1B|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MLSNICIRDSVKTTGFGRPQTKDNSNLFIYEVLPVAWWVDQNSGKLGRKL
ALVSSNLFNQQQQICNHYQFWTKSQRTLCMKFTELIPKVAEGAEMAYDEC
RHQFRWRRWNCAAKKPVLTNNVWTYETNEYPSLFGEDFEPGGIEASFVNA
IFSSGVAYSITKACSSNKLEGCSCERNKDGTITKTTTTKTTTAHHLSNGF
QWHQCNDNVMFGLSFAKKFIDSVELNWNPDRMFTTHAQVMMNLHNNKVGR
MLLKENLQQNCVCHGVSGTCSTQVCSKRLGPYRDIGGLLRKRTEKAIKVT
LKYINTHRILMPADNQLAPVTDTDLIYLKSSPSYCNKTTGRRCKLNSKKK
AKKKPRGGCDMMCCGAGYRTKLRTVTKNCKCQFIWCCKVTCEKCYHQQKV
HSCK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_041060	XLOC_041060	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00065525	TCONS_00065525	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR005817	Wnt

Vocabulary: **Molecular Function**
Term	Definition
GO:0005102	receptor binding

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development
GO:0016055	Wnt signaling pathway

Vocabulary: **Cellular Component**
Term	Definition
GO:0005576	extracellular region

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0016055	Wnt signaling pathway
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0005102	receptor binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005817	Wnt	PRINTS	PR01349	WNTPROTEIN	coord: 143..157 score: 45.14 coord: 262..276 score: 54.92 coord: 324..335 score: 56.69 coord: 200..212 score: 42.69 coord: 162..175 score: 40.05
IPR005817	Wnt	SMART	SM00097	wnt1_3	coord: 67..404 e-value: 5.9E-76 score: 268.3
IPR005817	Wnt	PFAM	PF00110	wnt	coord: 71..404 e-value: 8.2E-82 score: 275.1

Blast

[Close]

BLAST of unclassified Wnt ligand X1B vs. Swiss-Prot (Human)
Match: WNT4 (Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4)

HSP 1 Score: 230.72 bits (587), Expect = 1.488e-72
Identity = 122/364 (33.52%), Postives = 200/364 (54.95%), Query Frame = 0

Query:   50 LALVSSNLFNQQQQICNHYQFWTKSQRTLCMKFTELIPKVAEGAEMAYDECRHQFRWRRWNCAAKKPVLTNNVWTYETNEYPSLFGEDFEPGGIEASFVNAIFSSGVAYSITKACSSNKLEGCSCERNKDGTITKTTTTKTTTAHHLS-NGFQWHQCNDNVMFGLSFAKKFIDSVELNWNPDRMFTTHAQVMMNLHNNKVGRMLLKENLQQNCVCHGVSGTCSTQVCSKRLGPYRDIGGLLRKRTEKAIKVTLKYINTHRILMPADNQLAPVTDTDLIYLKSSPSYCNK--------TTGRRCKLNSKKKAKKKPRGGCDMMCCGAGYRTKLRTVTKNCKCQFIWCCKVTCEKCYHQQKVHSCK 404
            LA +SS     +++ C   +   + Q  +C +  E++  V  GA++A +EC++QFR RRWNC+              T +   +FG+    G  EA+FV AI S+GVA+++T+ACSS +LE C C+R               T H +S  GFQW  C+DN+ +G++F++ F+D  E +        + ++ +MNLHNN+ GR  +  +++  C CHGVSG+C  + C + + P+R +G  L+++ + A +V  + + + R L+P + Q  P TD DL+YL+ SP +C +        T GR C   SK         GC+++CCG G+ T    + + C C+F WCC V C +C    ++H+C+
Sbjct:   28 LAKLSSVGSISEEETCEKLKGLIQRQVQMCKRNLEVMDSVRRGAQLAIEECQYQFRNRRWNCS--------------TLDSLPVFGKVVTQGTREAAFVYAISSAGVAFAVTRACSSGELEKCGCDR---------------TVHGVSPQGFQWSGCSDNIAYGVAFSQSFVDVRERSKG-----ASSSRALMNLHNNEAGRKAILTHMRVECKCHGVSGSCEVKTCWRAVPPFRQVGHALKEKFDGATEVEPRRVGSSRALVPRNAQFKPHTDEDLVYLEPSPDFCEQDMRSGVLGTRGRTCNKTSKAI------DGCELLCCGRGFHTAQVELAERCSCKFHWCCFVKCRQCQRLVELHTCR 351

The following BLAST results are available for this feature:

BLAST of unclassified Wnt ligand X1B vs. Swiss-Prot (Human)

BLAST of unclassified Wnt ligand X1B vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WNT4	1.488e-72	33.52	Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4	[more]

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unclassified Wnt ligand X1B (polypeptide) - C. hemisphaerica