TCONS_00064965-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00064965-protein
Unique Name	TCONS_00064965-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	560

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00064965-protein ID=TCONS_00064965-protein|Name=TCONS_00064965-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
QIHPENTNDSPFAIEKTLLQSALKAYPKVHDALYSYSNDLENKDVTMYRL
LQDNTQLEIRHWFGWQSNNSLAIEDENTLSELPHFSNPFLSERYAVDVKL
SYDYYLQQARPMHAFLVYMKNRTHTSESIDAVTSSVCRLAIENYDSAIIS
TSCILFMELIEGPYQLLKVDVKAAVLISKYWNKRVSFEKKTNAQDVKTLL
IDLLLAKKSRENLITLVSHLEDCIEVAIHENKEIDRFSFEAICHWKIAIQ
FCRLHQLPLTTCFVKSCCQTDNWLPLFLFIQLYQIPPTQILEVMEECMSN
NSLKEHLLAIVKKSREIADGKTEKKRKTSKVKKETQQNPNTLVEQKSKHV
KKNYRAQFYSKLGTTGLPSSRGSVSENPRELATSPSDENMTRITNHLPMT
STPKKDQVDGNNQGHGQKLQHGDDLQLLDDTHFQEMSEIPNSNNLVDLLL
QCDDNNTPWRKLLAYSLAVFNPLLTVLAACYEEADCWECLCVWYVCSVNE
EMRFKICSSILDIKDEDAILMLRNHRWSNEDLLTIVKCLLTEGVKYAKLI
CHGFIIFRKV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_040735	XLOC_040735	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00064965	TCONS_00064965	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 319..348
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 362..419

Blast

[Close]

BLAST of TCONS_00064965-protein vs. Swiss-Prot (Human)
Match: SPTCS (Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 2.939e-31
Identity = 91/341 (26.69%), Postives = 169/341 (49.56%), Query Frame = 0

Query:   14 IEKTLLQSALKAYPKVHDALYSYSN--DLENKDVTMYRLLQDNTQLEIRHWFGWQSNNSLAIEDENTLSELPHFSNPFLSERYAVDVKLSYDYYLQQARPMHAFLVYMKNRTHTSES----IDAVTSSVCRLAIENYDSAIISTSCILFMELIEGPYQLLKVDVKAAVLISKY----WNKRVSFEKKTNAQDVKTLLIDLLLAKKSRENLITLVSHLEDCIEVAIHENKEIDRFSFEAICHWKIAIQFCRLHQLPLTTCFVKSCCQTDNWLPLFLFIQLYQIPPTQILEVMEECMSNNSLKEHLLAIVKKSREIADGKTEKKRKTSKVKKETQQNPNTLVE 344
            ++  LL+ AL  YPK+  AL+       +   D+T+Y L+Q  +  +    FGWQS N+LAI D    S LPHFS+P L  +YA+  +L++ YYL   RP  AF  ++      S++    I  V +    + + ++    I  +C+ F+EL+      L+VD+K A +I  Y     + + SF +++ A+ +  L      A   +     L+  LE+    +I + +EI R S E+   W + +QFCRLH + L+  +++ C + ++WL   +  QL+   P ++  +++    +  +++HL    +    +   K +  +  +K  +E Q +   + +
Sbjct: 1111 VDPQLLKMALTPYPKLKTALFPQCTPPSVLPSDITIYHLIQSLSPFDPSRLFGWQSANTLAIGD--AWSHLPHFSSPDLVNKYAIVERLNFAYYLHNGRPSFAFGTFLVQELIKSKTPKQLIQQVGNEAYVIGLSSFHIPSIGAACVCFLELLGLDSLKLRVDMKVANIILSYKCRNEDAQYSFIRESVAEKLSKL------ADGEKTTTEELLVLLEEGTWNSIQQ-QEIKRLSSESSSQWALVVQFCRLHNMKLSISYLRECAKANDWLQFIIHSQLHNYHPAEVKSLIQ--YFSPVIQDHLRLAFENLPSVPTSKMDSDQVCNKCPQELQGSKQEMTD 1440

The following BLAST results are available for this feature:

BLAST of TCONS_00064965-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00064965-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SPTCS	2.939e-31	26.69	Spatacsin OS=Homo sapiens GN=SPG11 PE=1 SV=3	[more]

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TCONS_00064965-protein (polypeptide) - C. hemisphaerica