TCONS_00064704-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00064704-protein
Unique NameTCONS_00064704-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064704-protein ID=TCONS_00064704-protein|Name=TCONS_00064704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MQPKKHTVTLVTSASGRTSTNNRSCVTNYLTLRKHTNVINVRAHSKHRVN
XSHSEKTHKCDQCSRAFKTPRELKYHVEGMHSLSRDFVCDVCQKGFSRPE
KLKRHLMIHAPDRPVYTCPFKNHVGCDKTFYRKDKLTRHLYSHSKVKPFK
CDQCDKSFARTDNLREHIRSHTGVFRYYCTVCGKGQPGPKKFLQHMLKQH
NVENAEIPRPFDDAAPEPLIQQHKAVIEAEAAARLVRAANNVKKDQGKKV
RKENIETTEIPLDGAVAIAAGLNPMIQSTLMPSPTQNVTSEQQQAFVAAA
SRGNIETLYTISHTGQGSGSPQFQISRAQDTMVRNEQLLREQLAREGLTT
REVAITSAGAATGATGRDSTQTAAADATTTERLQEVITRQLAESAAATQQ
GRELEEPTISMTVDQDGNITTSGRGLHLLSQGVLPGQLAGQLQFTTLLNS
DIIAIGEDVIRQNRNGVLPAMFQQKFGN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040587XLOC_040587Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064704TCONS_00064704Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 116..143
e-value: 4.9
score: 16.0
coord: 149..171
e-value: 9.7E-5
score: 31.7
coord: 58..81
e-value: 0.0029
score: 26.8
coord: 87..109
e-value: 7.1E-4
score: 28.9
coord: 177..200
e-value: 3.8
score: 16.5
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 89..109
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 151..171
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 60..81
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 149..173
score: 13.817
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 87..114
score: 13.484
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 58..86
score: 11.053
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 116..148
score: 12.133
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 129..184
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 56..109
NoneNo IPR availableGENE3D3.30.160.60coord: 100..136
e-value: 4.2E-12
score: 45.8
coord: 162..206
e-value: 1.4E-14
score: 53.7
NoneNo IPR availableGENE3D2.20.28.10coord: 19..68
e-value: 0.0016
score: 18.2
NoneNo IPR availableGENE3D3.30.160.60coord: 69..99
e-value: 7.2E-13
score: 48.0
NoneNo IPR availableGENE3D3.30.160.60coord: 137..161
e-value: 9.9E-17
score: 60.2
NoneNo IPR availablePFAMPF00096zf-C2H2coord: 58..81
e-value: 0.0067
score: 16.7
coord: 149..171
e-value: 2.0E-6
score: 27.8
coord: 116..143
e-value: 0.0039
score: 17.5
coord: 87..109
e-value: 4.8E-5
score: 23.5

Blast
[Close]
BLAST of TCONS_00064704-protein vs. Swiss-Prot (Human)
Match: ZN341 (Zinc finger protein 341 OS=Homo sapiens GN=ZNF341 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.646e-30
Identity = 58/127 (45.67%), Postives = 77/127 (60.63%), Query Frame = 0 
Query:   59 KCDQCSRAFKTPRELKYHVEGMHSLSRDFVCDVCQKGFSRPEKLKRHLMIHAPDRPVYTCPFKNHVGCDKTFYRKDKLTRHLYSHSKVKPFKCDQCDKSFARTDNLREHIRSHTGVFRYYCTVCGKG 185
            KC  C + F+    LK H   +HS  + + C VC+  F+R +KLKRH++IH P +  Y CPF  H GC K F R DKL  H+ SHS +K  KC  C KSF+R  +L EH R+HTG +++ C  C KG
Sbjct:  595 KCQVCKKFFRREHYLKLHAH-IHSGEKPYKCSVCESAFNRKDKLKRHMLIHEPFK-KYKCPFSTHTGCSKEFNRPDKLKAHILSHSGMKLHKCALCSKSFSRRAHLAEHQRAHTGNYKFRCAGCAKG 719
The following BLAST results are available for this feature:
BLAST of TCONS_00064704-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3415.646e-3045.67Zinc finger protein 341 OS=Homo sapiens GN=ZNF341 ... [more]
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