Cdx caudal homeodomain protein (polypeptide) - C. hemisphaerica

Overview
NameCdx caudal homeodomain protein
Unique NameTCONS_00064381-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00064381-protein ID=TCONS_00064381-protein|Name=Cdx caudal homeodomain protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MVDSGFCTFFTKDLDMFDDAKSAVIANLDVPPSNNNNDKQQTKAFNFMNF
SLTNPLEDAFMNNRPPLLTTPFHPQQPSSTPPASSTPPITSSSSTTSLDE
YTGNKSPKSEVTSLQDEQNSLIEQRIQDRTINLRNTAWPTYPNNRLFNFD
LGIGGTGQADLSPIFTNTISSCMVTPPNRNMNWFNRPSSVGTNDSWSNEF
SQDPTMRSRPCFSSHQTRELEREFGVCQYVTRRRRIELAYTLSLTEKQIK
TWFQNRRVKERKQKKISGEVIEHPDHTQGLLNQTVI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040366XLOC_040366Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00064381TCONS_00064381Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020479Homeobox_metazoa
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020479Homeobox domain, metazoaPRINTSPR00024HOMEOBOXcoord: 252..261
score: 70.33
coord: 227..238
score: 41.98
coord: 242..252
score: 57.21
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 205..267
e-value: 1.1E-21
score: 88.0
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 207..262
e-value: 6.8E-19
score: 67.4
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 203..263
score: 19.224
NoneNo IPR availableGENE3D1.10.10.60coord: 29..268
e-value: 1.9E-20
score: 72.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..117
NoneNo IPR availableCDDcd00086homeodomaincoord: 207..264
e-value: 2.26422E-19
score: 78.4392
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 238..261
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 188..264

Blast
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BLAST of Cdx caudal homeodomain protein vs. Swiss-Prot (Human)
Match: HXB7 (Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 PE=1 SV=4)

HSP 1 Score: 80.8777 bits (198), Expect = 2.938e-18
Identity = 36/62 (58.06%), Postives = 49/62 (79.03%), Query Frame = 0 
Query:  207 RSRPCFSSHQTRELEREFGVCQYVTRRRRIELAYTLSLTEKQIKTWFQNRRVKERKQKKISG 268
            R R  ++ +QT ELE+EF   +Y+TRRRRIE+A+TL LTE+QIK WFQNRR+K +K+ K +G
Sbjct:  139 RGRQTYTRYQTLELEKEFHYNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMKWKKENKTAG 200
The following BLAST results are available for this feature:
BLAST of Cdx caudal homeodomain protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HXB72.938e-1858.06Homeobox protein Hox-B7 OS=Homo sapiens GN=HOXB7 P... [more]
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