TCONS_00063523-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00063523-protein
Unique Name	TCONS_00063523-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	428

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00063523-protein ID=TCONS_00063523-protein|Name=TCONS_00063523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=428bp
MSTKLSPKNILYVSSDEYVKICDLHPKVRGRAKLVDCLIEVYGLNEKMKI
NFPERACKEELESFHTSEYVTCLESIESYFKENGNFNSKREEKICLDYSE
LMDEVECDIIAHGFGYDCEIFPDMLQYAKIVSGATLTAANSLMRKESNIA
INLGGGWHHAHVDEAAGFCYVNDIVIGILHLLKSFKRILYIDFDVHHGDG
VEEAFQFSNKVFTLSLHKYAHGFFPGTGDIVDVGKGSGTNFTCNIPLKNG
IRDENYESVFCKVFDAVIRHFDPHLIVSQCGADMLNGDPLGGFNLTENCL
PRCFKKIQAIGLPLLVLGGGGYHLPNTARCWLKLIASLLDVDVDDNIPEH
EHLEKYGPDFSLEISPSNRKDENTIEYLNSMLEDVLENLSFSSADTEENN
KENTNANVEVIDQEGCESEPVSKKNKIC

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_039819	XLOC_039819	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00063523	TCONS_00063523	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000286	His_deacetylse
IPR023801	His_deacetylse_dom
IPR003084	His_deacetylse_1

Vocabulary: **Molecular Function**
Term	Definition
GO:0004407	histone deacetylase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0016575	histone deacetylation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016575	histone deacetylation
molecular_function	GO:0004407	histone deacetylase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 394..414
None	No IPR available	SUPERFAMILY	52768	Arginase/deacetylase	coord: 9..390
IPR000286	Histone deacetylase superfamily	PRINTS	PR01270	HDASUPER	coord: 187..202 score: 68.15 coord: 155..178 score: 55.05 coord: 273..283 score: 50.35
IPR023801	Histone deacetylase domain	PFAM	PF00850	Hist_deacetyl	coord: 25..337 e-value: 1.5E-80 score: 270.9
IPR023801	Histone deacetylase domain	GENE3D	3.40.800.20		coord: 7..401 e-value: 6.2E-103 score: 344.1
IPR003084	Histone deacetylase	PIRSF	PIRSF037913	HDAC_I_euk	coord: 3..427 e-value: 3.8E-124 score: 413.0

Blast

[Close]

BLAST of TCONS_00063523-protein vs. Swiss-Prot (Human)
Match: HDAC8 (Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=1 SV=2)

HSP 1 Score: 336.65 bits (862), Expect = 3.334e-113
Identity = 166/379 (43.80%), Postives = 229/379 (60.42%), Query Frame = 0

Query:   11 LYVSSDEYVKICDLHPKVRGRAKLVDCLIEVYGLNEKMKINFPERACKEELESFHTSEYVTCLESIESYFKENGNFNSKREEKICLDYSELMDEVECDIIAHGFGYDCEIFPDMLQYAKIVSGATLTAANSLMRKESNIAINLGGGWHHAHVDEAAGFCYVNDIVIGILHLLKSFKRILYIDFDVHHGDGVEEAFQFSNKVFTLSLHKYAHGFFPGTGDIVDVGKGSGTNFTCNIPLKNGIRDENYESVFCKVFDAVIRHFDPHLIVSQCGADMLNGDPLGGFNLTENCLPRCFKKIQAIGLPLLVLGGGGYHLPNTARCWLKLIASLLDVDVDDNIPEHEHLEKYGPDFSLEISPSNRKDENTIEYLNSMLEDVLENL 389
            +Y+ S EYV +CD   K+  RA +V  LIE Y L+++M+I  P+ A  EE+ +FHT  Y+  L+ +                      S+  D+   D I +G GYDC     +  YA  + GAT+TAA  L+     +AIN  GGWHHA  DEA+GFCY+ND V+GIL L + F+RILY+D D+HHGDGVE+AF F++KV T+SLHK++ GFFPGTGD+ DVG G G  ++ N+P+++GI+DE Y  +   V   V + F+P  +V Q GAD + GDP+  FN+T   + +C K I    L  L+LGGGGY+L NTARCW  L   +L   +   IP+HE    YGPD+ LEI+PS R D N    +  +L  +  NL
Sbjct:   17 VYIYSPEYVSMCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKV----------------------SQEGDDDHPDSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNL 373

The following BLAST results are available for this feature:

BLAST of TCONS_00063523-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00063523-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HDAC8	3.334e-113	43.80	Histone deacetylase 8 OS=Homo sapiens GN=HDAC8 PE=...	[more]

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TCONS_00063523-protein (polypeptide) - C. hemisphaerica