TCONS_00062993-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00062993-protein
Unique NameTCONS_00062993-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length189

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00062993-protein ID=TCONS_00062993-protein|Name=TCONS_00062993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
RSPVCPKIVSLSPRDGYQICDYLISFFLSEVIIINSIRMNKQIQRLFLQN
RGYLFANSSLFLNRSCTTQASSNVSEHSQSKTFQELLDESPIMKFGRPDN
KCLVGKITDVCNDDLYIDFGGKFEAVLKRPEEKANFYRKGSLVRILLRKF
EMTGAFLGDPRHITLCEADALLVGPYSKKFEQRRKKDNN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_039453XLOC_039453Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00062993TCONS_00062993Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019375Ribosomal_S28_mit
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019375Ribosomal protein S28, mitochondrialPFAMPF10246MRP-S35coord: 79..177
e-value: 1.4E-27
score: 95.6

Blast
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BLAST of TCONS_00062993-protein vs. Swiss-Prot (Human)
Match: RT28 (28S ribosomal protein S28, mitochondrial OS=Homo sapiens GN=MRPS28 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.977e-20
Identity = 42/109 (38.53%), Postives = 67/109 (61.47%), Query Frame = 0 
Query:   81 KTFQELLDESPIMKFGRPDNKCLVGKITDVCNDDLYIDFGGKFEAVLKRPEEKANFYRKGSLVRILLRKFEMTGAFLGDPRHITLCEADALLVGPYSKKFEQRRKKDNN 189
            ++F  +L  SP+ + G   +K ++G+I  +  +DLYIDFGGKF  V +RPE     Y+KG+ VR+ L   E+T  FLG     T+ EA+A+L+G    K + R K++++
Sbjct:   78 ESFASMLRHSPLTQMGPAKDKLVIGRIFHIVENDLYIDFGGKFHCVCRRPEVDGEKYQKGTRVRLRLLDLELTSRFLGATTDTTVLEANAVLLGIQESK-DSRSKEEHH 185
The following BLAST results are available for this feature:
BLAST of TCONS_00062993-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RT281.977e-2038.5328S ribosomal protein S28, mitochondrial OS=Homo s... [more]
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