TCONS_00061444-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061444-protein
Unique NameTCONS_00061444-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length158

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061444-protein ID=TCONS_00061444-protein|Name=TCONS_00061444-protein|organism=Clytia hemisphaerica|type=polypeptide|length=158bp
RKIRETISKTFPEIPKETLTSLIPNKEEMSVMKILTYSERNVTCYCLKKN
PIFFEVEGCILPTVYTLWQHPNLILSFRTFPNVLNNLQGGADLMFPGIIP
PATGFGDFHKDQIAAVTLLGNGAAVAVGITTCSKRDIETGGPQGKKLTIY
HCVKDHLW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038545XLOC_038545Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061444TCONS_00061444Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002478PUA
IPR015947PUA-like_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003723 RNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainGENE3D2.30.130.10coord: 76..158
e-value: 3.6E-14
score: 52.1
IPR002478PUA domainPROSITEPS50890PUAcoord: 74..154
score: 9.168
NoneNo IPR availableCDDcd11610eIF2D_Ncoord: 1..58
e-value: 8.86588E-18
score: 72.6902
IPR015947PUA-like domainSUPERFAMILY88697PUA domain-likecoord: 82..158

Blast
[Close]
BLAST of TCONS_00061444-protein vs. Swiss-Prot (Human)
Match: EIF2D (Eukaryotic translation initiation factor 2D OS=Homo sapiens GN=EIF2D PE=1 SV=3)

HSP 1 Score: 142.51 bits (358), Expect = 1.868e-40
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 0 
Query:    1 RKIRETISKTFPEIPKETLTSLIPNKEEMSVMKILTYSERNVTCYCLKKNPIFFEVEGCILPTVYTLWQHPNLILSFRTFPNVLNNLQGGADLMFPGIIPPATGFGDFHKDQIAAVTLLGNGAAVAVGITTCSKRDIETGGPQGKKLTIYHCVKDHLW 158
            RK+R  ++  FP +  + ++ L+P KEE++++K+  +    VT Y    NPI FE+E  + PTVYTLW +P+L+ +F T+P VL  L GGADLM PG++ P  G     K  + A++L+GN A VA+G+   S  ++ T G +G+  ++ H  +DHLW
Sbjct:   20 RKLRADVTTAFPTLGTDQVSELVPGKEELNIVKLYAHKGDAVTVYVSGGNPILFELEKNLYPTVYTLWSYPDLLPTFTTWPLVLEKLVGGADLMLPGLVMPPAGLPQVQKGDLCAISLVGNRAPVAIGVAAMSTAEMLTSGLKGRGFSVLHTYQDHLW 177
The following BLAST results are available for this feature:
BLAST of TCONS_00061444-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EIF2D1.868e-4039.87Eukaryotic translation initiation factor 2D OS=Hom... [more]
back to top