TCONS_00061108-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061108-protein
Unique NameTCONS_00061108-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length350

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061108-protein ID=TCONS_00061108-protein|Name=TCONS_00061108-protein|organism=Clytia hemisphaerica|type=polypeptide|length=350bp
MASKMKIRDNPNENYTLFEMANLSWEILKEEWYERGPTQHFLSDFQQDVM
NYSQITQNDILAVIFVTFLFTIHRFVLTKLILRPISRYVGFSPKDDVKFS
ESSCKLFYYSLLYAFEYYLVIYKYPELRYNVTSHWADLTPTSIVPNDILA
LYIIEAGFYFHSIYATLFVDAWKKDSIAMLIHHALANGLILFSLCFRYHR
IGLIVLYLHDVADIFLESSKIVLCFKNKFPNKVLETLSIVGFFGFTFSWF
WSRLFLYPQIVLFSTGFIARTMLPEANFYFLFNVMLWSLMCLNVWWFHFI
LALVYRIATGQTKGVEDTREYVSEKENGAAHHVKNGDATNGSANKKQKAS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038341XLOC_038341Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061108TCONS_00061108Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006634TLC-dom
IPR013599TRAM1
IPR016439Lag1/Lac1
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006634TRAM/LAG1/CLN8 homology domainSMARTSM00724lag1_27coord: 97..309
e-value: 5.9E-30
score: 115.5
IPR006634TRAM/LAG1/CLN8 homology domainPFAMPF03798TRAM_LAG1_CLN8coord: 98..301
e-value: 1.1E-32
score: 113.3
IPR006634TRAM/LAG1/CLN8 homology domainPROSITEPS50922TLCcoord: 95..309
score: 13.386
IPR013599TRAM1-like proteinPFAMPF08390TRAM1coord: 56..92
e-value: 6.5E-6
score: 25.6
IPR016439Ceramide synthase component Lag1/Lac1PIRSFPIRSF005225LAG1_LAC1coord: 6..350
e-value: 1.1E-55
score: 187.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 324..350

Blast
[Close]
BLAST of TCONS_00061108-protein vs. Swiss-Prot (Human)
Match: CERS1 (Ceramide synthase 1 OS=Homo sapiens GN=CERS1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 6.911e-53
Identity = 99/274 (36.13%), Postives = 161/274 (58.76%), Query Frame = 0 
Query:   70 FTIHRFVLTKLILRPISRYVGFSPKDDVKFSESSCKLFYYSLLYAFEYYLVIYKYPELRYNVTSHWADLTPTSIVPNDILALYIIEAGFYFHSIYATLFVDAWKKDSIAMLIHHALANGLILFSLCFRYHRIGLIVLYLHDVADIFLESSKIVLCFKNKFPN--KVLETLSIVGFFGFTFSWFWSRLFLYPQIVLFSTGFIARTMLPEANFYFLFNVMLWSLMCLNVWWFHFILALVYRIATGQTKGVEDTREY-----VSEKENGAAHHVKNG 336
            +T  R   T  + RP+++     P+D  K  ES+ K  +Y   +++  YL+        ++  S + D TP   VP DI A Y+++  FY HSIYATL++D W+KDS+ ML+HH +   LI+ S  FRYH +G++VL+LHD++D+ LE +K+ + FK++  +  ++    + +G   F FSWFW RL+ +P  VL++T   +   +P+  FYF FN +L  L  +N++WF +I+A   ++ TGQ   ++D REY      S K + A   ++NG
Sbjct:   70 WTALRSAATARLFRPLAKRCCLQPRDAAKMPESAWKFLFYLGSWSYSAYLLFGTDYPFFHDPPSVFYDWTPGMAVPRDIAAAYLLQGSFYGHSIYATLYMDTWRKDSVVMLLHHVVTLILIVSSYAFRYHNVGILVLFLHDISDVQLEFTKLNIYFKSRGGSYHRLHALAADLGCLSFGFSWFWFRLYWFPLKVLYATSHCSLRTVPDIPFYFFFNALLLLLTLMNLYWFLYIVAFAAKVLTGQVHELKDLREYDTAEAQSLKPSKAEKPLRNG 343
The following BLAST results are available for this feature:
BLAST of TCONS_00061108-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CERS16.911e-5336.13Ceramide synthase 1 OS=Homo sapiens GN=CERS1 PE=1 ... [more]
back to top