TCONS_00061071-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00061071-protein
Unique NameTCONS_00061071-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length315

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00061071-protein ID=TCONS_00061071-protein|Name=TCONS_00061071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
MTRAILVTGGTGLVGKGIEIVSKQENPDDDKFIFLSSKDGDLRVLSEVES
IFEKHKPTHVIHLAALVGGLFRNLRENLQFFRQNMEINDNVLACCHKYKV
EKCVSCLSTCIFPDKTSYPIDETMVHNGPPHDSNFGYSYAKRMIDVLNKG
YNDQYGCKFTSVIPCNIFGPHDNFNIEDGHVLPGIIHKIYKAKEEQKPLT
IWGTGKPLRQFIYSLDLAKLFLIVLRDYEDSSPIILSVDESDEVSIKQAA
EMIVQAMDFKYGLEYDTTRSDGQYKKTASNAKLRKLWPDYKFTPMKEAID
QTCKWFMKNYDTARK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038330XLOC_038330Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00061071TCONS_00061071Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase
IPR028614GDP_fucose/colitose_synth
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0050662coenzyme binding
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0009226nucleotide-sugar biosynthetic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009226 nucleotide-sugar biosynthetic process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050662 coenzyme binding
molecular_function GO:0016491 oxidoreductase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001509NAD-dependent epimerase/dehydratasePFAMPF01370Epimerasecoord: 5..230
e-value: 1.9E-53
score: 181.3
NoneNo IPR availableGENE3D3.40.50.720coord: 25..160
e-value: 3.7E-7
score: 29.6
NoneNo IPR availableGENE3D3.90.25.10coord: 161..315
e-value: 9.2E-33
score: 112.7
IPR028614GDP-L-fucose synthase/GDP-L-colitose synthaseHAMAPMF_00956GDP_fucose_synthcoord: 2..308
score: 38.542
IPR028614GDP-L-fucose synthase/GDP-L-colitose synthaseCDDcd05239GDP_FS_SDR_ecoord: 5..307
e-value: 5.36908E-162
score: 455.888
IPR016040NAD(P)-binding domainSUPERFAMILY51735NAD(P)-binding Rossmann-fold domainscoord: 3..312

Blast
[Close]
BLAST of TCONS_00061071-protein vs. Swiss-Prot (Human)
Match: FCL (GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=1 SV=1)

HSP 1 Score: 438.343 bits (1126), Expect = 9.142e-156
Identity = 200/312 (64.10%), Postives = 249/312 (79.81%), Query Frame = 0 
Query:    5 ILVTGGTGLVGKGIE-IVSKQENPDDDKFIFLSSKDGDLRVLSEVESIFEKHKPTHVIHLAALVGGLFRNLRENLQFFRQNMEINDNVLACCHKYKVEKCVSCLSTCIFPDKTSYPIDETMVHNGPPHDSNFGYSYAKRMIDVLNKGYNDQYGCKFTSVIPCNIFGPHDNFNIEDGHVLPGIIHKIYKAKEEQKPLTIWGTGKPLRQFIYSLDLAKLFLIVLRDYEDSSPIILSVDESDEVSIKQAAEMIVQAMDFKYGLEYDTTRSDGQYKKTASNAKLRKLWPDYKFTPMKEAIDQTCKWFMKNYDTARK 315
            ILVTGG+GLVGK I+ +V+       + ++F+SSKD DL   ++  ++FEK +PTHVIHLAA+VGGLFRN++ NL F+R+N+ +NDNVL    +    K VSCLSTCIFPDKT+YPIDETM+HNGPPH+SNFGYSYAKRMIDV N+ Y  QYGC FT+VIP N+FGPHDNFNIEDGHVLPG+IHK++ AK     LT+WGTG P RQFIYSLDLA+LF+ VLR+Y +  PIILSV E DEVSIK+AAE +V+AMDF   + +DTT+SDGQ+KKTASN+KLR   PD++FTP K+A+ +TC WF  NY+ ARK
Sbjct:   10 ILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYEQARK 321
The following BLAST results are available for this feature:
BLAST of TCONS_00061071-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FCL9.142e-15664.10GDP-L-fucose synthase OS=Homo sapiens GN=TSTA3 PE=... [more]
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