TCONS_00060951-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00060951-protein
Unique Name	TCONS_00060951-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	319

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00060951-protein ID=TCONS_00060951-protein|Name=TCONS_00060951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MVSFICDACGNTVKKNQVEKHYQTACRNCSVLSCIDCGVDFPGDAYASHT
SCISEAEKYQGHLYQPKDKENKGEAKQKQWTQQLQGASSNVKDPKLRSLL
EKLSEYSNIPRKRKKFENFCKNSVKVYDTKTLDALWDAFNEGSNTKTPTT
NGNTQNGHNNTTDVNTNGTTNNNKDDSEDENKVTESKKKKKKRKLEEDEE
KDQDKQKNKKKKKKIADQEEIDGLILFSEEVQGEEKDENDNQHKGKFHWH
KAIKTALKESDDHELPLKKLRKKVIAAYEAHGTDHRASDLQQCRTLFEKK
LNTYPKAKIIKDKYVKLCT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038262	XLOC_038262	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00060951	TCONS_00060951	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014898	Znf_C2H2_LYAR
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 174..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..216
None	No IPR available	PROSITE	PS51804	ZF_C2HC_LYAR	coord: 29..53 score: 11.38
None	No IPR available	PROSITE	PS51804	ZF_C2HC_LYAR	coord: 1..27 score: 12.419
IPR014898	Zinc finger, C2H2, LYAR-type	PFAM	PF08790	zf-LYAR	coord: 32..59 e-value: 6.4E-15 score: 54.7
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 31..60
IPR013087	Zinc finger C2H2-type	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 1..26

Blast

[Close]

BLAST of TCONS_00060951-protein vs. Swiss-Prot (Human)
Match: LYAR (Cell growth-regulating nucleolar protein OS=Homo sapiens GN=LYAR PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 1.107e-43
Identity = 82/188 (43.62%), Postives = 117/188 (62.23%), Query Frame = 0

Query:    1 MVSFICDACGNTVKKNQVEKHYQTACRNCSVLSCIDCGVDFPGDAYASHTSCISEAEKYQGHLYQPKDKENKGEAKQKQWTQQLQGA--SSNVKDPKLRSLLEKLSEYSNIPRKRKKFENFCKNSVKVYDTKTLDALWDAFNEGSNTKTPTTNGNTQNGH---NNTTDVNTNGTTNNNKDDSEDENKV 183
            MV F C+ACG +VKK QVEKH  + CRNC  LSCIDCG DF GD Y +H  CISE +KY G  Y+   K +KG+ KQ+ W Q++       NV  PK+R LLE++S + N+PRK+ KF+N+ KNS+KV++   LD +W+ F+E SN++      + +  H   N   +++T    +  KD  E + +V
Sbjct:    1 MVFFTCNACGESVKKIQVEKHV-SVCRNCECLSCIDCGKDFWGDDYKNHVKCISEDQKYGGKGYE--GKTHKGDIKQQAWIQKISELIKRPNV-SPKVRELLEQISAFDNVPRKKAKFQNWMKNSLKVHNESILDQVWNIFSEASNSEPVNKEQDQRPLHPVANPHAEISTKVPASKVKDAVEQQGEV 184

The following BLAST results are available for this feature:

BLAST of TCONS_00060951-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00060951-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LYAR	1.107e-43	43.62	Cell growth-regulating nucleolar protein OS=Homo s...	[more]

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TCONS_00060951-protein (polypeptide) - C. hemisphaerica