TCONS_00060784-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060784-protein
Unique NameTCONS_00060784-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060784-protein ID=TCONS_00060784-protein|Name=TCONS_00060784-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MESLNLFILQQVIKKRSSHEEGTIQDLKKQKFHFQKLVQSIDSLSDGQAT
LSYNDDNFREFSVHISPNDGPYKGGKVGFNFKMKPSYPSTPPQITCQNII
YHPNIDDEGDICLSVLNEWSSQNNDLVDCIQGLLYLLHYPNLEDPLSPFF
APGEDENEFQENVKLTMAGSVFNGVTSA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_038190XLOC_038190Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060784TCONS_00060784Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000608UBQ-conjugat_E2
IPR016135UBQ-conjugating_enzyme/RWD
IPR023313UBQ-conjugating_AS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 15..172
e-value: 3.7E-14
score: 63.0
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 50..164
e-value: 7.2E-25
score: 87.2
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBIQUITIN_CONJUGAT_2coord: 54..147
score: 17.985
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10coord: 9..170
e-value: 1.1E-26
score: 93.3
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 47..170
IPR023313Ubiquitin-conjugating enzyme, active sitePROSITEPS00183UBIQUITIN_CONJUGAT_1coord: 101..116

Blast
[Close]
BLAST of TCONS_00060784-protein vs. Swiss-Prot (Human)
Match: UBC12 (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.253e-24
Identity = 61/170 (35.88%), Postives = 93/170 (54.71%), Query Frame = 0 
Query:    4 LNLFILQQVIKKRSSHEEGTIQDLKKQKFHFQKLVQSIDSLSDGQAT-LSYND-DNFREFSVHISPNDGPYKGGKVGFNFKMKPSYPSTPPQITCQNIIYHPNIDDEGDICLSVLNEWSSQNNDLVDCIQGLLYLLHYPNLEDPLSPFFAPGEDENE--FQENVKLTMAG 169
            + LF L+Q  KK      GT    KK      ++ + I+ L+  +   +S++D D+   F + I P++G YK GK  F+FK+   YP  PP++ C+ ++YHPNID EG++CL++L E       +   I GL YL   PN EDPL+   A     N   F++NV+ +M G
Sbjct:    2 IKLFSLKQQ-KKEEESAGGTKGSSKKASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG 170
The following BLAST results are available for this feature:
BLAST of TCONS_00060784-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBC123.253e-2435.88NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
back to top