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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00060637-protein ID=TCONS_00060637-protein|Name=TCONS_00060637-protein|organism=Clytia hemisphaerica|type=polypeptide|length=439bp
MADKECEETAISFSNPISLYVPITDGSAIQQQKLIPPNSSVYEPAFNAFN
LGVELPQHIQPASHHQKTLQQHNTQPYHQQAWPNQTLQAQHPTFIEAPST
ANKVLPIFEGQSFPFRLWYLVNHEFYDDVIKWSDDGNYVIITSEGRFEDK
VLIEPRDRIFKTTSMKSFIRQLNLYGFHKVQLDKDKNFSHLNVKDKASWP
ETVFAHSSFKRSRQELLEQVRRRCKVKQHKQTKAQGFPVESYPSTSSVSN
PKKRRNMFLEYSNMVASSSASNQQQSSTQLQESQSENLQQTYNPSASEIM
MQYPNLLPQPDQFLTAGRDAMMATTSAQRLSPASSVKRNLQAIDWGNISN
INNSSTSTTNEDVSPRFDCQINQLQSPSTNRQVSLREKTTHLTTPPCLPP
AAEQSLLDSSMSKENLNPLADFCASLFYPNKENELGCDD Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR000232 | Heat shock factor (HSF)-type, DNA-binding | PRINTS | PR00056 | HSFDOMAIN | coord: 113..136
score: 32.02
coord: 168..180
score: 76.92 |
| IPR000232 | Heat shock factor (HSF)-type, DNA-binding | SMART | SM00415 | hsfneu3 | coord: 109..223
e-value: 1.5E-13
score: 61.0 |
| IPR000232 | Heat shock factor (HSF)-type, DNA-binding | PFAM | PF00447 | HSF_DNA-bind | coord: 113..223
e-value: 8.5E-22
score: 77.5 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | GENE3D | 1.10.10.10 | | coord: 108..223
e-value: 7.4E-26
score: 89.9 |
| IPR011991 | Winged helix-turn-helix DNA-binding domain | SUPERFAMILY | 46785 | "Winged helix" DNA-binding domain | coord: 112..223 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 265..289 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 226..252 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 376..399 |
Blast
The following BLAST results are available for this feature:
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