TCONS_00060506-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00060506-protein
Unique Name	TCONS_00060506-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	669

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00060506-protein ID=TCONS_00060506-protein|Name=TCONS_00060506-protein|organism=Clytia hemisphaerica|type=polypeptide|length=669bp
MKNETKKRSSQIDGWKMKHGKQNTDQPEMNDPGFTDSVFQDKVAKFSKLL
CEAGTREIKTNEETLLNIKAFNNIEDPPICLEQFMQCPSNFRKQTFFENL
KINNVIIGKLAVCSASGWTVKLLGVMEGQKRWIKDLQITARLVITKSYDD
DVDEDYEVGDLVKALVEKVDVQSKDIWLTLEPSVAAKSQYQLPKLGKIQD
PDTVEYLLESREFDEENDSAYLEHIRDSSLFNHPHGVSLLASHFNVNQDH
HGFVVCNTLKIKETALELREKQMLDWSMSMVGIGVKHFREKNLKEAKKCL
DKALSFYPKNVEGFVARGALKANQSDLKGAIDDFRKALEVNPHHRNGKKY
LIETSLSLARSHEKEKRWKESSKCYHEIMKHDPDHKEAKERYHQIHQILS
SKIISGREAAKNEETSSHRRNSASSKTKDRIEQLKRLLQEDTNKNSSSSS
STSSSSSSSSESESESNSSSGEDWIEKTNSKSRKRVSDRKRRSHHKHYSS
KSRKNRKRSRKSSSQSPERHSRKNLYETSETSRKERDFKSTHEPGGASNL
LDNNALDKDAKQILRKLKDFSSEEIDIVKKMLRKNESAENTSKDDRKVEE
KSKGYRESRHSPRNYRDTEKSTRDYRSSLYSSRNRDDLRRNEDRYDRKDD
YRHSKREKYSKQSSYDQRD

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_038061	XLOC_038061	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00060506	TCONS_00060506	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019734	TPR_repeat
IPR011990	TPR-like_helical_dom
IPR013026	TPR-contain_dom
IPR003029	S1_domain
IPR012340	NA-bd_OB-fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 424..444
None	No IPR available	GENE3D	2.40.50.140		coord: 88..185 e-value: 4.9E-5 score: 22.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 401..557
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 581..669
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 277..310 e-value: 0.22 score: 20.6 coord: 311..344 e-value: 0.0026 score: 27.0 coord: 352..385 e-value: 0.3 score: 20.1
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 311..344 score: 10.473
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 277..310 score: 8.762
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 352..385 score: 6.844
IPR011990	Tetratricopeptide-like helical domain	GENE3D	1.25.40.10		coord: 257..604 e-value: 8.8E-23 score: 80.0
IPR011990	Tetratricopeptide-like helical domain	SUPERFAMILY	48452	TPR-like	coord: 271..399
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 277..385 score: 18.895
IPR003029	S1 domain	PROSITE	PS50126	S1	coord: 103..181 score: 8.952
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 97..185

Blast

[Close]

BLAST of TCONS_00060506-protein vs. Swiss-Prot (Human)
Match: TTC14 (Tetratricopeptide repeat protein 14 OS=Homo sapiens GN=TTC14 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 2.569e-33
Identity = 98/332 (29.52%), Postives = 169/332 (50.90%), Query Frame = 0

Query:   77 PPICLEQFMQCPSNFRKQTFFENLKINNVIIGKLAVCSASGWTVKLLGVMEGQKRWIKDLQITA----RLVITKSYDDDVDEDYEVGDLVKALVEKVDVQSKDIWLTLEPSVAAKSQYQLPKLGKIQDPDTVEYLLESREFDEENDSAYLEHIRDSSL-FNHPHGVSLLASHFNVNQDHHGFVV----CNTLKIKETALELREKQMLDWSMSMVGIGVKHFREKNLKEAKKCLDKALSFYPKNVEGFVARGALKANQSDLKGAIDDFRKALEVNPHHRNGKKYLIETSLSLARSHEKEKRWKESSKCYHEIMKHDPDHKEAKERYHQIHQIL 399
            PP  LEQFM+ PS  R++ FF +++  +++IG+++     G+ + L+ +  G  R I  L+ITA    R V + S   D    Y+ GD+++A ++ +D   + + ++L  S        + KLG I   +   Y   S E +  +  +Y E++  SSL F +P  V  L     +++ +   ++           + A  LR+KQ   W++  V IGV +F+     +A    +KAL    +NVE  VARGAL A +  L  AI+DF  ALE  P HRN +KYL +T +      E+E+++  +   Y + +  D   K+A++   ++H+ +
Sbjct:  102 PP--LEQFMEIPSMDRRELFFRDIERGDIVIGRISSIREFGFFMVLICLGSGIMRDIAHLEITALCPLRDVPSHSNHGDPLSYYQTGDIIRAGIKDIDRYHEKLAVSLYSSSLPPHLSGI-KLGVISSEELPLYYRRSVELNSNSLESY-ENVMQSSLGFVNPGVVEFLLEKLGIDESNPPSLMRGLQSKNFSEDDFASALRKKQSASWALKCVKIGVDYFKVGRHVDAMNEYNKALEIDKQNVEALVARGALYATKGSLNKAIEDFELALENCPTHRNARKYLCQTLVERGGQLEEEEKFLNAESYYKKALALDETFKDAEDALQKLHKYM 429

The following BLAST results are available for this feature:

BLAST of TCONS_00060506-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00060506-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TTC14	2.569e-33	29.52	Tetratricopeptide repeat protein 14 OS=Homo sapien...	[more]

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TCONS_00060506-protein (polypeptide) - C. hemisphaerica