TCONS_00060270-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060270-protein
Unique NameTCONS_00060270-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length244

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060270-protein ID=TCONS_00060270-protein|Name=TCONS_00060270-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MVKGFVAFRILLVFVVAVSCVCSEKQECRARCKDGRDGRNGRNGVDGVDG
RNGIDGFCGKHGINGTNGIDGKDGRNGKDGKDGRNGKDGKNGRDGRDGKD
ITRKRNWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVN
CDACCKRWFITFDGKECTPVAIDGVVYMYKGKGSRYKNLHRPRVIAGHCK
INKSGRVNVGFNVGNCRSYPPGDAHTGWNSATRIHIYEMEPPQQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037910XLOC_037910Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060270TCONS_00060270Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 41..95
e-value: 2.2E-8
score: 33.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..100
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..20
score: 5.0

Blast
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BLAST of TCONS_00060270-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.505e-38
Identity = 80/220 (36.36%), Postives = 122/220 (55.45%), Query Frame = 0 
Query:   25 KQECRARCKDGRDGRNGR--NGVDGVDGRNGIDGFCGKHGINGTNGIDGKDGRNGKDGKDGRNGKDGKNGRDGRDGKDITRKRNWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVNCDACCKRWFITFDGKECT-PVAIDGVVYMYKGKGSRYK--NLHRPRVIAGHCKINKSGRVNVGFNVGNCRSYPPGDAHTGWNSATRIHIYEM 239
            KQ+ + R ++  D  NG    G  GV GR   DG  G +GI GT GI G+DG  G+ G+              R+  + +   N+K+C+W +++ G D G I  C+F+K   ++ L V  S ++R+   +ACC+RW+ TF+G EC+ P+ I+ ++Y+ +G        N+HR   + G C+   +G V+V   VG C  YP GDA TGWNS +RI I E+
Sbjct:   37 KQKAQLRQREVVDLYNGMCLQGPAGVPGR---DGSPGANGIPGTPGIPGRDGFKGEKGE------------CLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEEL 241
The following BLAST results are available for this feature:
BLAST of TCONS_00060270-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR14.505e-3836.36Collagen triple helix repeat-containing protein 1 ... [more]
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