TCONS_00060254-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060254-protein
Unique NameTCONS_00060254-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length245

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060254-protein ID=TCONS_00060254-protein|Name=TCONS_00060254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=245bp
MMKGFVAFRILLVFVVAVWCVCSEKQECRARCKDGRDGRNGRNGVDGVDG
RNGVDGFCGKHGINGTNGIDGKDGQNGKDGKDGKDGRNGKDGKNGKDGKD
ITRKRNWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVN
CDNCCKRWFITFDGKECTPVAIDGVVYMRWGKGNRYKNLLRPRVIAGHCK
INKSGRINVGFNVGNCQGYNSNVDANTGWNSATRIHIYEMEPPQQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037899XLOC_037899Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060254TCONS_00060254Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008160Collagen triple helix repeatPFAMPF01391Collagencoord: 38..93
e-value: 2.1E-8
score: 33.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 67..100

Blast
[Close]
BLAST of TCONS_00060254-protein vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.550e-32
Identity = 65/192 (33.85%), Postives = 108/192 (56.25%), Query Frame = 0 
Query:   55 DGFC--GKHGINGTNGIDGKDGQNGKDGKDGKDGRNGKDGKNGKDGKDITRKRNWKECAWDNISDGRDNGLIKTCSFSKSEQSTYLYVQVSSNMRIVNCDNCCKRWFITFDGKECT-PVAIDGVVYMRWGKG--NRYKNLLRPRVIAGHCKINKSGRINVGFNVGNCQGYNSNVDANTGWNSATRIHIYEME 241
            +G C  G  G+ G +G  G +G  G  G  G+DG  G+ G+  ++  + +   N+K+C+W +++ G D G I  C+F+K   ++ L V  S ++R+   + CC+RW+ TF+G EC+ P+ I+ ++Y+  G    N   N+ R   + G C+   +G ++V   VG C  Y    DA+TGWNS +RI I E+ 
Sbjct:   52 NGMCLQGPAGVPGRDGSPGANGIPGTPGIPGRDGFKGEKGECLRESFEESWTPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKG-DASTGWNSVSRIIIEELP 242
The following BLAST results are available for this feature:
BLAST of TCONS_00060254-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR15.550e-3233.85Collagen triple helix repeat-containing protein 1 ... [more]
back to top