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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00060223-protein ID=TCONS_00060223-protein|Name=TCONS_00060223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp
MSKNRLSSQNTQQDDEFSLLESSINQMSVEEYNEPHSPSKNPEVRGAFID
TKEGRNESGAKQVMIEVQPDTWKKTKRHPSKIKKENNDVVKGFEKCRKEG
GKVLNLSKLGIPNVPKDIRELPYLTDLILYGNRIVTLPVDIGYLVHLEKL
ALSENSLFTLPNEIVHCRKLTFLDLRHNKFKEVPPVLYQLTSLKQLFLRF
NRLCSIGSEIGQLTQLTMLNLRENRLTNLPMTIGKLKYLSTLDVAHNHLQ
HLPDSIGECRQLTTLHLQHNELKELPNSIGNLKSLSRLGLRYNGLLELPK
SIYHCAQLEEINFEGNKLKQLPSGFLLACKNCSSITLSRNNFEVFPSDGP
NQFSGTFTLNMEHNQLVQIPYGAFSKAEYLTKLILKDNQIKKLPLDFGSW
SSLDELNLGTNQLDVLLDDIKWLVNLEVLVLSNNQLKRIPRSIGNLRKLR
VLDLDENLIECLPTEIEYLKSLEKLFLQTNRLTTLPKTIGHLSNLVYLSV
AENDITYLPSEIGTLGNLGHLYLNHNPNLHALPFELVLCQSLEIMNIDGC
PLSTLPEEIVANGPSIVIQYLRLEGPYTGMTGS Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR003591 | Leucine-rich repeat, typical subtype | SMART | SM00369 | LRR_typ_2 | coord: 121..142
e-value: 100.0
score: 4.9
coord: 423..445
e-value: 0.09
score: 21.9
coord: 306..328
e-value: 150.0
score: 3.5
coord: 469..491
e-value: 1.3
score: 18.0
coord: 260..281
e-value: 66.0
score: 6.6
coord: 236..259
e-value: 0.73
score: 18.9
coord: 168..190
e-value: 24.0
score: 10.1
coord: 144..167
e-value: 0.5
score: 19.4
coord: 446..468
e-value: 6.3
score: 14.9
coord: 353..376
e-value: 180.0
score: 3.0
coord: 213..235
e-value: 13.0
score: 12.5
coord: 492..515
e-value: 3.1
score: 16.8
coord: 282..305
e-value: 9.2
score: 13.5 |
| None | No IPR available | SMART | SM00364 | LRR_bac_2 | coord: 539..558
e-value: 190.0
score: 3.9
coord: 423..442
e-value: 40.0
score: 9.2
coord: 236..255
e-value: 30.0
score: 10.1
coord: 305..324
e-value: 180.0
score: 4.2
coord: 492..511
e-value: 620.0
score: 0.0
coord: 282..301
e-value: 160.0
score: 4.5
coord: 121..140
e-value: 210.0
score: 3.6
coord: 446..465
e-value: 530.0
score: 0.6
coord: 259..278
e-value: 33.0
score: 9.7
coord: 469..488
e-value: 10.0
score: 13.6
coord: 144..163
e-value: 330.0
score: 2.1
coord: 213..232
e-value: 18.0
score: 11.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..53 |
| None | No IPR available | SUPERFAMILY | 52047 | RNI-like | coord: 275..559 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 80..195
e-value: 1.3E-23
score: 82.3 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 413..469
e-value: 9.0E-17
score: 60.2 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 361..412
e-value: 3.8E-11
score: 41.9 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 196..245
e-value: 8.2E-15
score: 54.1 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 246..360
e-value: 2.3E-26
score: 91.9 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | GENE3D | 3.80.10.10 | | coord: 470..575
e-value: 1.4E-21
score: 75.9 |
| IPR032675 | Leucine-rich repeat domain, L domain-like | SUPERFAMILY | 52058 | L domain-like | coord: 102..370 |
| IPR001611 | Leucine-rich repeat | PFAM | PF13855 | LRR_8 | coord: 447..505
e-value: 5.9E-8
score: 32.3
coord: 122..180
e-value: 4.9E-9
score: 35.7
coord: 358..413
e-value: 9.2E-7
score: 28.4
coord: 239..295
e-value: 3.8E-9
score: 36.1 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 494..515
score: 5.995 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 192..213
score: 6.695 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 355..376
score: 4.809 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 123..144
score: 5.756 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 517..539
score: 5.533 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 284..305
score: 5.533 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 448..469
score: 7.45 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 261..282
score: 7.627 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 169..190
score: 7.265 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 146..167
score: 6.603 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 402..423
score: 5.948 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 215..237
score: 6.672 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 238..259
score: 6.757 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 379..400
score: 5.864 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 425..446
score: 7.743 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 471..492
score: 6.541 |
| IPR001611 | Leucine-rich repeat | PROSITE | PS51450 | LRR | coord: 307..328
score: 6.264 |
Blast
BLAST of TCONS_00060223-protein vs. Swiss-Prot (Human)
Match: SHOC2 (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2) HSP 1 Score: 546.584 bits (1407), Expect = 0.000e+0 Identity = 284/526 (53.99%), Postives = 382/526 (72.62%), Query Frame = 0
Query: 58 SGAKQVMIEVQPD-TWKKTKRHPSKIKKENN-DVVKGFEKCRKEGGKVLNLSKLGIPNVPKDIRELPYLTDLILYGNRIVTLPVDIGYLVHLEKLALSENSLFTLPNEIVHCRKLTFLDLRHNKFKEVPPVLYQLTSLKQLFLRFNRLCSIGSEIGQLTQLTMLNLRENRLTNLPMTIGKLKYLSTLDVAHNHLQHLPDSIGECRQLTTLHLQHNELKELPNSIGNLKSLSRLGLRYNGLLELPKSIYHCAQLEEINFEGNKLKQLPSGFLLACKNCSSITLSRNNFEVFPSDGPNQFSGTFTLNMEHNQLVQIPYGAFSKAEYLTKLILKDNQIKKLPLDFGSWSSLDELNLGTNQLDVLLDDIKWLVNLEVLVLSNNQLKRIPRSIGNLRKLRVLDLDENLIECLPTEIEYLKSLEKLFLQTNRLTTLPKTIGHLSNLVYLSVAENDITYLPSEIGTLGNLGHLYLNHNPNLHALPFELVLCQSLEIMNIDGCPLSTLPEEIVANGPSIVIQYLRLEGPYTGMT 581
S A Q + D T K+ P KK +N +V+K KCR+E L+LSK I +P I+EL LT+L LY N++ +LP ++G LV+L LALSENSL +LP+ + + +KL LDLRHNK +E+P V+Y+L SL L+LRFNR+ ++ +I L++L+ML++REN++ LP IG+L L TLDVAHN L+HLP IG C Q+T L LQHNEL +LP++IGNL SLSRLGLRYN L +P+S+ C+ LEE+N E N + LP L + +S+TL+RN F+++P GP+QFS ++LNMEHN++ +IP+G FS+A+ L+KL +KDNQ+ LPLDFG+W+S+ ELNL TNQL + +D+ LV+LEVL+LSNN LK++P +GNLRKLR LDL+EN +E LP EI YLK L+KL L N+LTTLP+ IGHL+NL +L + EN +T+LP EIGTL NL LYLN NPNLH+LPFEL LC L IM+I+ CPLS LP +IVA GPS +IQ+L+++GPY M
Sbjct: 57 SSAAQPGVAFSVDNTIKRPNPAPGTRKKSSNAEVIKELNKCREENSMRLDLSKRSIHILPSSIKELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRITTVEKDIKNLSKLSMLSIRENKIKQLPAEIGELCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTIGNLSSLSRLGLRYNRLSAIPRSLAKCSALEELNLENNNISTLPESLLSSLVKLNSLTLARNCFQLYPVGGPSQFSTIYSLNMEHNRINKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPEDVSGLVSLEVLILSNNLLKKLPHGLGNLRKLRELDLEENKLESLPNEIAYLKDLQKLVLTNNQLTTLPRGIGHLTNLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALCSKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV 582
The following BLAST results are available for this feature:
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