TCONS_00060068-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00060068-protein
Unique NameTCONS_00060068-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length169

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00060068-protein ID=TCONS_00060068-protein|Name=TCONS_00060068-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MPFQSRFAKSFLTNARVWYLIDARDQINGKLAAYICAILQGKIKPTYHPL
SDLGDHVVVTNCKDIAMSGERPWETKIYRHHTGYPGGLKEIKARDVHKKD
PCEILWRSVRGQMPKTRNRNRDMKRLHLFVDDKHPFASNIYAKLLPPHPM
PKRLDEYTAHEIQNYPKLF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037783XLOC_037783Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00060068TCONS_00060068Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005822Ribosomal_L13
IPR005823Ribosomal_L13_bac-type
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005822Ribosomal protein L13PIRSFPIRSF002181RPL13p_RPL13Aa_RPL16e_RPL13ocoord: 1..169
e-value: 5.7E-47
score: 157.5
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 18..138
e-value: 6.4E-44
score: 149.1
IPR005822Ribosomal protein L13GENE3D3.90.1180.10coord: 13..169
e-value: 3.4E-52
score: 176.1
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 18..155
score: 25.587
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 18..132
e-value: 3.61744E-49
score: 155.74
IPR005822Ribosomal protein L13SUPERFAMILY52161Ribosomal protein L13coord: 10..137
IPR005823Ribosomal protein L13, bacterial-typeTIGRFAMTIGR01066TIGR01066coord: 9..138
e-value: 7.0E-38
score: 127.6

Blast
[Close]
BLAST of TCONS_00060068-protein vs. Swiss-Prot (Human)
Match: RM13 (39S ribosomal protein L13, mitochondrial OS=Homo sapiens GN=MRPL13 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 9.836e-48
Identity = 78/167 (46.71%), Postives = 105/167 (62.87%), Query Frame = 0 
Query:    5 SRFAKSFLTNARVWYLIDARDQINGKLAAYICAILQGKIKPTYHPLSDLGDHVVVTNCKDIAMSGERPWETKIYRHHTGYPGGLKEIKARDVHKKDPCEILWRSVRGQMPKTRNRNRDMKRLHLFVDDKHP--FASNIYAKLLPPHPMPKRLDEYTAHEIQNYPKLF 169
            SR  + + T AR+WYL+D + Q  GKLAA     LQG  KP YH LSD GDHVV+ N + IA SG + WE K+Y  HTGYPGG +++ A  +H +DP  I+  ++ G +PK  +R   M+RLHLF D+  P     N+  +L  P  +PKRLDEYT  EI  +P+L+
Sbjct:    5 SRAPQQWATFARIWYLLDGKMQPPGKLAAMASIRLQGLHKPVYHALSDCGDHVVIMNTRHIAFSGNK-WEQKVYSSHTGYPGGFRQVTAAQLHLRDPVAIVKLAIYGMLPKNLHRRTMMERLHLFPDEYIPEDILKNLVEELPQPRKIPKRLDEYTQEEIDAFPRLW 170
The following BLAST results are available for this feature:
BLAST of TCONS_00060068-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RM139.836e-4846.7139S ribosomal protein L13, mitochondrial OS=Homo s... [more]
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