TCONS_00059907-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059907-protein
Unique NameTCONS_00059907-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length361

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059907-protein ID=TCONS_00059907-protein|Name=TCONS_00059907-protein|organism=Clytia hemisphaerica|type=polypeptide|length=361bp
KNKRWRALKNSKMNETSDTTGGYDVEFAESLSANLDDIKCAICLLILKEP
LQANPCGHRFCKSCIERVPGFGLDNELVCPSDRQSVKVFADIGKEREILN
LQVKCTSFDLSCNWTGELRTLEGHLKSCPHAIFQCKYQALGCKFQGNRQQ
LCTHLKEDIDDHFSLQMEKIMRQENQIREHEIEIAQHQETISQQNNVISS
LLVEVKSLSVMFFPRCPYEFVIENFKARLTNSKQQNDFIYSETFYYLNGY
RARLKVYLNGRNAVQGTHMSVYFQIMKGPLDDSLQWPMIFGLIKISLIIN
EKCKHKMAINCKQDQEHLKTRFVKPLREEGEAYGVKYFAHRDLPFDIHGD
LIKLVVHVTKL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037672XLOC_037672Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059907TCONS_00059907Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR008974TRAF-like
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 170..197
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 39..68
e-value: 1.0E-9
score: 38.0
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 34..89
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 40..82
e-value: 7.1E-5
score: 32.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 40..83
score: 12.061
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 39..67
e-value: 6.28759E-7
score: 44.744
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 35..96
e-value: 3.7E-12
score: 45.0
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 97..155
e-value: 1.0E-14
score: 53.9
IPR008974TRAF-likeGENE3D2.60.210.10coord: 213..354
e-value: 8.6E-18
score: 64.3
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 100..169
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 220..298
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 56..65

Blast
[Close]
BLAST of TCONS_00059907-protein vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.409e-17
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 0 
Query:   22 GYDVEFAESLSANLDDIKCAICLLILKEPLQANPCGHRFCKSCIERVPGFGLDNELVCPSDRQSV---KVFADIGKEREILNLQVKCTSFDLSCNWTGELRTLEGHLKSCPHAIFQCKYQALGCKFQGNRQQLCTHLKED 158
            G+D +F E     L    C +C   ++EP+Q + CGHRFC +C++    F  +    CP D+  +   K++ D   E ++L L ++C   +  C W+G LR L+GHL +C   +  C  +   C  + +R+ L  HL+ D
Sbjct:    3 GFDYKFLEKPKRRL---LCPLCGKPMREPVQVSTCGHRFCDTCLQE---FLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSFNVIPCPNR---CPMKLSRRDLPAHLQHD 133
The following BLAST results are available for this feature:
BLAST of TCONS_00059907-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF46.409e-1731.43TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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