TCONS_00059844-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059844-protein
Unique NameTCONS_00059844-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1324

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059844-protein ID=TCONS_00059844-protein|Name=TCONS_00059844-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1324bp
MEDSMTEESKVGQIKTEETLKKQSKEEVDDSEEEESQSDEDAKNTLDSET
HLNGHTDLSNDKGTLVKDEVDIQPKTQNDSMKERIESDIIEQPLAEPPQI
TSKPSDYADFAAIHSFLTMFGVELDLPNVSLIDLEQIFSTNHRLSFEKDN
IGILEVLYMKLFRKLKQSYRYSPVANVTSDRLFKTIVRYVYLVRFEQAEQ
VQFQGYESLSTEQRLKLFKSLCEIQFEENSKFRSTLQETFKGDNASALRL
EPFGVEQEGYHIWFQEDQDCNFIVYASGATNENIEEWDVRARTFEELEVY
IADLKSRTEVNPKDTVEERSKVVREEKEKEKEKRRQEREEKRKAAAELAA
KKKKGKGRGRRAKEVAPVEISSSESEEEEDDGCVKCLRNKQDDQVLLCDT
CDAGYHATCLVPPVTTIPEGDWYGPHCMHVTLAQKLAERMAAIRKKVQAK
ERKSRRMQFYGIRQSNIIESNSNEPQTGRRAGRTKVDYRFSEYDRTVEDA
LRSSEEENDRPSRRSNGLSRTTTTTSSSGRVRRKRFNIEAEDYGGSDDQD
PDYSGADSGRSDVDDFLVPDDFDEEEERHRNKYLRRSKRDAGKYSSASRS
RRRKRRRRGRYDDDDTDDDGDDDFSDRGDSEDDAPRRSTRILRKGPQVTY
KDTLDDDIYGSDADGDKEVGGKRMAEDDDEYKNSDGAEDSGDDDKEKSDS
DASNSGNEEMSNLNLRKRKKNVIESDDEDESKNFDKSENESEKSDNDGEK
IETSEINMNKNKQTNPEDAINDVDTNNDKTDSNGVSTDAPSDKKEAESAI
NKLPNNIELKANDINNSNINPTLEFLRTNQDKTDTELKAASDEQPSPVIE
SKLDLFKEQQQTHSNPLSPVIPTQQKFNTQGILNPMIRHPTQAVRTSVPT
NGVPSSPTGHTMNNIMNYQRSPHPLTLINQQLGNQSPMNSPRAVHPVHAM
NQQLGNQSPINSPNTMQALNQQLGSQSPVSSPRMQQQLGNQSPMNSPRAM
QPQLGSPSPMNSPRAMHPNQQLGSPSPMNSPRAMQPQLGSPSPMNSPRAM
HPNQQLGSPSHQTQQQSAFMKQHQMANPYLMDERSNGSSKGTNSPRPNAH
TVGAPQYPQNPNPHGMQHQQKLNSSSNQPNPTSSTTGFRPYESDQQKANT
ALSQASNNDQKFVNQHLQSWMNQHHGPGAPNNQHGHLAPHLQQPRQPYPM
YHPQYYSQHQQAQRPTVHNPKPHAVNYGQGHGPGNFPGFSSRHIYGGPPN
TSSNPYGSPALHSXTHVIFTVGLLIHLRIHTALQRRIPASKCQATATPAH
GLTYLSRVNTLRHRRQATIQHRLE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037640XLOC_037640Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059844TCONS_00059844Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR019787Znf_PHD-finger
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 433..453
NoneNo IPR availableCOILSCoilCoilcoord: 14..41
NoneNo IPR availableCOILSCoilCoilcoord: 823..843
NoneNo IPR availableCOILSCoilCoilcoord: 313..354
NoneNo IPR availableCDDcd15519PHD1_Lid2p_likecoord: 382..427
e-value: 9.496E-18
score: 78.6615
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 382..428
e-value: 5.7E-9
score: 45.8
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 383..428
e-value: 2.6E-8
score: 33.5
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 380..430
score: 8.529
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 313..436
e-value: 8.7E-12
score: 44.5
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 367..429

Blast
[Close]
BLAST of TCONS_00059844-protein vs. Swiss-Prot (Human)
Match: RSF1 (Remodeling and spacing factor 1 OS=Homo sapiens GN=RSF1 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.553e-23
Identity = 65/212 (30.66%), Postives = 109/212 (51.42%), Query Frame = 0 
Query:  104 PSDYADFAAIHSFLTMFGVELDLPNVSLIDLEQIFSTNHRLSFEKDNIGILEV------LYMKLFRKLKQSYRYSPVANVTSDRLFKTIVRYVYLVRFEQAEQVQFQGYESLSTEQRLKLFKSLCEIQFEENSKFRSTLQETFKGDNASALRLEPFGVEQEGYHIWFQEDQDCNFIVYASGATNENIEEWDVRARTFEELEVYIADLKSRTE 309
            P    +FA + SFL  +G  LDLP +   +LE++      L     ++G  EV      L++KL RK+ +S        VT+DR  K +++         A +++ +GY  +S E +L L K LCE QF++N KF++ + E    ++A  +RL+P G +++G   W+Q DQD N  +Y     +++   W    R   EL   +A LK++ +
Sbjct:   17 PGSCPNFAVVCSFLERYGPLLDLPELPFPELERV------LQAPPPDVGNGEVPKELVELHLKLMRKIGKS--------VTADRWEKYLIKICQEFNSTWAWEMEKKGYLEMSVECKLALLKYLCECQFDDNLKFKNIINE----EDADTMRLQPIGRDKDGLMYWYQLDQDHNVRMYIEEQDDQDGSSWKCIVRNRNELAETLALLKAQID 210

HSP 2 Score: 104.76 bits (260), Expect = 2.069e-22
Identity = 58/175 (33.14%), Postives = 93/175 (53.14%), Query Frame = 0 
Query:  378 EEDDGCVKCLRNKQDDQVLLCDTCDAGYHATCLVPPVTTIPEGDWYGPHCMHVTLAQKLAERM----AAIRKKVQAKERKSRRMQFYGIRQSNII---ESNSNEPQ--------------TGRRAGRTK--VDYRFSEYDRTVEDALRSSEEENDRPSRRSNGLSRTTTTTSSSG 529
            ++D+ C KC      + +LLCD+CD+GYH  CL PP+  IP+G+W+ P C H  L +KL E++     A++KK +A ER+  R+ + GI   NII   E + +E Q                RR+ RT+  + YRF E+D  +++A+    +E D       G+ R    ++ +G
Sbjct:  889 DDDEPCKKCGLPNHPELILLCDSCDSGYHTACLRPPLMIIPDGEWFCPPCQHKLLCEKLEEQLQDLDVALKKKERA-ERRKERLVYVGISIENIIPPQEPDFSEDQEEKKKDSKKSKANLLERRSTRTRKCISYRFDEFDEAIDEAIEDDIKEAD-----GGGVGRGKDISTITG 1057
The following BLAST results are available for this feature:
BLAST of TCONS_00059844-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RSF13.553e-2330.66Remodeling and spacing factor 1 OS=Homo sapiens GN... [more]
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