TCONS_00059804-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059804-protein
Unique NameTCONS_00059804-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059804-protein ID=TCONS_00059804-protein|Name=TCONS_00059804-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
MQQPGYPPPGQPGYQGQPGYPPAQPGYPPAGQPGYPPPGQPGYPPVMQQP
GGAPGGEWMPMVAQAPPNCPPGLEYLTQIDQLIVKQQVELLEAFTGFETA
NKYKVKNSLGQTIYFAAEDTDCCTRQCCGPGRPFDMKIMDNSQREVIHLV
RPLRCTGCCFPCCLQEIEVSSPPGTPIGYITQQWSLCAPKFEIQDAQHNP
VLLIEGPVCTFNMCGDIEFKVLALDGSNQVGRISKQWGGFAKEAFTDADT
FGIT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037624XLOC_037624Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059804TCONS_00059804Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005552Scramblase
IPR025659Tubby_C-like
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005552ScramblasePFAMPF03803Scramblasecoord: 59..253
e-value: 1.0E-73
score: 247.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..59
IPR025659Tubby C-terminal-like domainSUPERFAMILY54518Tubby C-terminal domain-likecoord: 99..254

Blast
[Close]
BLAST of TCONS_00059804-protein vs. Swiss-Prot (Human)
Match: PLS1 (Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR1 PE=1 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.083e-91
Identity = 150/258 (58.14%), Postives = 178/258 (68.99%), Query Frame = 0 
Query:    4 PGYPPP---GQPGYQGQPG----YPPAQPGYPPAGQPGYPPPGQPGYP-PVMQQPGGAPGGEWMPMVAQAPPNCPPGLEYLTQIDQLIVKQQVELLEAFTGFETANKYKVKNSLGQTIYFAAEDTDCCTRQCCGPGRPFDMKIMDNSQREVIHLVRPLRCTGCCFPCCLQEIEVSSPPGTPIGYITQQWSLCAPKFEIQDAQHNPVLLIEGPVCTFNMCGDIEFKVLALDGSNQVGRISKQWGGFAKEAFTDADTFGI 253
            P YPP    G PGY G PG    YPP   G+   G  G+P P QP Y  PV  QP GA G  WMP   Q P NCPPGLEYL+QIDQ+++ QQ+ELLE  TGFET NKY++KNS GQ +YFAAEDTDCCTR CCGP RPF ++I+DN  +EVI L RPLRC+ CC PCCLQEIE+ +PPG PIGY+ Q W  C PKF IQ+ +   VL I GP    + CGD++F++ +LD    VG+ISK W G  +EAFTDAD FGI
Sbjct:   23 PQYPPTAFQGPPGYSGYPGPQVSYPPPPAGHSGPGPAGFPVPNQPVYNQPVYNQPVGAAGVPWMP-APQPPLNCPPGLEYLSQIDQILIHQQIELLEVLTGFETNNKYEIKNSFGQRVYFAAEDTDCCTRNCCGPSRPFTLRIIDNMGQEVITLERPLRCSSCCCPCCLQEIEIQAPPGVPIGYVIQTWHPCLPKFTIQNEKREDVLKISGPCVVCSCCGDVDFEIKSLDEQCVVGKISKHWTGILREAFTDADNFGI 279
The following BLAST results are available for this feature:
BLAST of TCONS_00059804-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PLS11.083e-9158.14Phospholipid scramblase 1 OS=Homo sapiens GN=PLSCR... [more]
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