TCONS_00059727-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00059727-protein
Unique Name	TCONS_00059727-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	655

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00059727-protein ID=TCONS_00059727-protein|Name=TCONS_00059727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=655bp
MAVESNTRSSFSFDGNYFALLSIDNRLRIWDVASGKLLREYSSTDDVEST
CTCLCWTRNLDPKSKDGRKRKKEKGKREQLSSLLIGYRNGGLVAYNSNSD
QLEQNYRDGHSKKVNCIDYNYSNNNFYSCSDDKHIVEWNIHTKELISKWK
AGKSAINRVAVTPSGKNLLSAGMVIKLWDLETKKEIMKFDGHASPVSILQ
FSGYRSPNKTSDDDDGCYFLSGSLEDRQISSWQINHSQPDKSTVASFVTN
EIPLYLSVALEKDSKPVKMVVGCQNGTVHFYEFQMNGKVQRPLEPSKSLS
LSLKDGNKNIPANLYGGYVENLQGDLTTKIANGSSVQMDFNSFNFTEAGK
EESITKDLSSNLFMKEHSKISKKPVELAQIRGKQHVIGSTFTAPAKIPKL
DINDNLQDLQKTDMSMVERLKNLKDNEFGQMTNAGSISVLLTQGLHTKDT
KLLDEVISKQYHVNVIKNTLKRMSASDAVKLLILIVDQIHHQPKLMVFNN
MMAWTKNILAIHLSSILLMSDVGDATGKLFNLLKAQQETYPALFSFQGKV
DLLISQVSKTPDETKTEKAQEEDLLNPCVVFHDDSDDEDILDRVRRDDED
VSESSPEQQEVEEGDKMGSDGEEESDAVSSSDDEEEMKVGGKGDEKDDSS
DSGTF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_037571	XLOC_037571	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00059727	TCONS_00059727	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR007148	SSU_processome_Utp12
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 406..426
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 596..655
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 99..139 e-value: 6.7E-5 score: 32.3 coord: 142..179 e-value: 0.017 score: 24.3 coord: 182..233 e-value: 0.18 score: 20.9
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 106..139 e-value: 0.0028 score: 18.4
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 107..148 score: 10.642
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 10..40 score: 9.339
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 4..461 e-value: 9.6E-44 score: 149.1
IPR007148	Small-subunit processome, Utp12	PFAM	PF04003	Utp12	coord: 449..555 e-value: 7.6E-9 score: 35.7
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 107..242 score: 12.947
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 10..292

Blast

[Close]

BLAST of TCONS_00059727-protein vs. Swiss-Prot (Human)
Match: WDR43 (WD repeat-containing protein 43 OS=Homo sapiens GN=WDR43 PE=1 SV=3)

HSP 1 Score: 293.508 bits (750), Expect = 6.016e-90
Identity = 188/580 (32.41%), Postives = 303/580 (52.24%), Query Frame = 0

Query:   17 YFALLSIDNRLRIWDVASGKLLREYSSTDDVESTCTCLCWT-RNLDPKSKDGRKRKKEK--GKREQLSSLLIGYRNGGLVAYNSNSDQLEQNY-RDGHSKKVNCIDYNYSNNNFYSCSDDKHIVEWNIHTKELISKWKAGKSAINRVAVTPSGKNLLSAGMVIKLWDLETKKEIMKFDGHASPVSILQFSGYRSPNKTS--DDDDGCYFLSGSLEDRQISSWQINHSQPDKSTVASFVTNEIPLYLSVAL-EKDSKPVKMVVGCQNGTVHFYEFQMNGKVQRPLEPSKSLSLSLK-DGNKNIPAN---LYGGYVENLQGDLTTKIANGSSVQMDFNSFNFTEAGKEESITKDLSSNLFMKEHSKISKKPVELAQIRGKQHVIGSTFTAPAKIPKLDINDNLQDLQKT---DMSMVERLKNL-----KDNEFGQMTNAGSISVLLTQGLHTKDTKLLDEVISKQYHVNVIKNTLKRMSASDAVKLLILIVDQIHHQPKLMVFNNMMAWTKNILAIHLSSILLMSDVGDATGKLFNLLKAQQETYPALFSFQGKVDLLISQVSKTPDETK--TEKAQEEDLL 575
            YFAL S D  LR+W+ A+ +L +EY  +  +  TCTCL W    L  K    RK++K +  G   Q   L +G   G ++ Y++   +L       GH  +VNCI ++  +   YSCSDDKHIVEWN+ T ++  KWK   S+++ + ++P GK LLSAG  IKLW LETK+    F GHA+PVS L F+  R PN++   D   G YFLSG++ DR ++ WQ+     +KS V SF   + P+Y+ + L E   +PVK+ V C++G VH +E  +NG  ++PL  + ++ ++    G K+ P     L  G+  +    ++  +  GS  Q                + +D+S+    K  + I+K    +     K  V G      A  P     + ++  +K+   ++S+ ERL  +     K  +    TN  S  VLLTQGL + D ++L++V+  + +VN+IK T+ RM     + LL  +  ++   P   V   M+ W K +L +H S +  + D+    G L+ L++++ +T+  L    GK+ LLI+QV+ + ++TK  T   Q+  L+
Sbjct:   28 YFALASTDGHLRVWETANNRLHQEYVPSAHLSGTCTCLAWAPARLQAKESPQRKKRKSEAVGMSNQTDLLALGTAVGSILLYSTVKGELHSKLISGGHDNRVNCIQWHQDSGCLYSCSDDKHIVEWNVQTCKVKCKWKGDNSSVSSLCISPDGKMLLSAGRTIKLWVLETKEVYRHFTGHATPVSSLMFTTIRPPNESQPFDGITGLYFLSGAVHDRLLNVWQVRSENKEKSAVMSFTVTDEPVYIDLTLSENKEEPVKLAVVCRDGQVHLFEHILNGYCKKPLTSNCTIQIATPGKGKKSTPKPIPILAAGFCSD---KMSLLLVYGSWFQPTIERVALNSREPHMCLVRDISNCWAPKVETAITKVRTPVMNSEAKVLVPGIPGHHAAIKPAPPQTEQVESKRKSGGNEVSIEERLGAMDIDTHKKGKEDLQTN--SFPVLLTQGLESNDFEMLNKVLQTR-NVNLIKKTVLRMPLHTIIPLLQELTKRLQGHPNSAVL--MVQWLKCVLTVHASYLSTLPDLVPQLGTLYQLMESRVKTFQKLSHLHGKLILLITQVTAS-EKTKGATSPGQKAKLV 598

The following BLAST results are available for this feature:

BLAST of TCONS_00059727-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00059727-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR43	6.016e-90	32.41	WD repeat-containing protein 43 OS=Homo sapiens GN...	[more]

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TCONS_00059727-protein (polypeptide) - C. hemisphaerica