TCONS_00059029-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00059029-protein
Unique NameTCONS_00059029-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length120

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00059029-protein ID=TCONS_00059029-protein|Name=TCONS_00059029-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MFLFQSYNYYIIIMSYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVL
LQFDKAINNALSNKVKNRINFKGKLNTYRFCDNVWTFVLNNVTFREVGDS
VKVDKVKIVACDGKESKNDD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_037180XLOC_037180Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00059029TCONS_00059029Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003194TFIIA_gsu
IPR015872TFIIA_gsu_N
IPR015871TFIIA_gsu_C
IPR009088TFIIA_b-brl
IPR009083TFIIA_a-hlx
Vocabulary: Cellular Component
TermDefinition
GO:0005672transcription factor TFIIA complex
Vocabulary: Biological Process
TermDefinition
GO:0006367transcription initiation from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006367 transcription initiation from RNA polymerase II promoter
cellular_component GO:0005672 transcription factor TFIIA complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.287.190coord: 15..64
e-value: 1.1E-25
score: 88.9
IPR003194Transcription initiation factor IIA, gamma subunitPIRSFPIRSF009415TFIIA_gamma_humcoord: 12..119
e-value: 1.0E-51
score: 171.7
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPFAMPF02268TFIIA_gamma_Ncoord: 15..62
e-value: 4.5E-24
score: 84.1
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalPRODOMPD009224coord: 15..61
e-value: 1.0E-9
score: 146.0
IPR015872Transcription initiation factor IIA, gamma subunit, N-terminalCDDcd10145TFIIA_gamma_Ncoord: 15..63
e-value: 1.63421E-24
score: 88.3915
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalPFAMPF02751TFIIA_gamma_Ccoord: 65..113
e-value: 6.3E-25
score: 86.9
IPR015871Transcription initiation factor IIA, gamma subunit, C-terminalCDDcd10014TFIIA_gamma_Ccoord: 69..114
e-value: 4.01328E-22
score: 82.2955
IPR009088Transcription factor IIA, beta-barrelGENE3D2.30.18.10coord: 68..119
e-value: 1.6E-26
score: 91.4
IPR009088Transcription factor IIA, beta-barrelSUPERFAMILY50784Transcription factor IIA (TFIIA), beta-barrel domaincoord: 64..114
IPR009083Transcription factor IIA, helicalSUPERFAMILY47396Transcription factor IIA (TFIIA), alpha-helical domaincoord: 16..66

Blast
[Close]
BLAST of TCONS_00059029-protein vs. Swiss-Prot (Human)
Match: T2AG (Transcription initiation factor IIA subunit 2 OS=Homo sapiens GN=GTF2A2 PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.169e-61
Identity = 86/103 (83.50%), Postives = 96/103 (93.20%), Query Frame = 0 
Query:   14 MSYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINNALSNKVKNRINFKGKLNTYRFCDNVWTFVLNNVTFREVGDSVKVDKVKIVACDGKES 116
            M+YQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAIN AL+ +V+NR+NF+G LNTYRFCDNVWTFVLN+V FREV + +KVDKVKIVACDGK +
Sbjct:    1 MAYQLYRNTTLGNSLQESLDELIQSQQITPQLALQVLLQFDKAINAALAQRVRNRVNFRGSLNTYRFCDNVWTFVLNDVEFREVTELIKVDKVKIVACDGKNT 103
The following BLAST results are available for this feature:
BLAST of TCONS_00059029-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
T2AG1.169e-6183.50Transcription initiation factor IIA subunit 2 OS=H... [more]
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