TCONS_00058728-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00058728-protein
Unique Name	TCONS_00058728-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	523

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00058728-protein ID=TCONS_00058728-protein|Name=TCONS_00058728-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp
MSSRADKAAKGQKDKHHAILRELVQEPTNKTCAECLAKGPRWSSWSLGVF
VCIRCAGIHRNLGVHISKMKSIDLDSWTPEQLQNVLRWGNKRAAEYYECY
LPKDFTRPQATHALEAFIRNKYEKKLYIKKDGEPPENPQSKVDRLKNDSR
EDKEKDKKTTSTASRQRRAEKKVDLSKPATTASSNNTILNMAKTEPKKSS
PATANTLSAEQHQKSHSMNDLLSLDHPTPTANAEVKHSASSNDLLNFGGW
SDPVPAASSANADPFSSNTTTTSAQTNTDLFANAPAQTTPEAPAKSAKES
ILSLYGSSTNTGMKPQQQQQQQQQQQQMFGVPGGVYTMNNMMPQQQQQQM
HQQQRFQHQQQQPQMQQYNQQGMMSQMNQMNMQMQQMNFNQQPQQQQQQF
NMMNQQQTPQQQFNSYKQQPQRQPMMNTQQQRQTMMNTQMNAGFPQQQPQ
QQSQMQGFNMMGQNQGMSGMGGSNMQSMGWSQPQQQMGQQPQQQMFGGLN
GNMNGMVNSGNTGGNTMNNLLWN

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_036993	XLOC_036993	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00058728	TCONS_00058728	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001164	ArfGAP

Vocabulary: **Molecular Function**
Term	Definition
GO:0005096	GTPase activator activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005096	GTPase activator activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001164	Arf GTPase activating protein	PRINTS	PR00405	REVINTRACTNG	coord: 29..48 score: 43.45 coord: 69..90 score: 34.33 coord: 48..65 score: 59.96
IPR001164	Arf GTPase activating protein	SMART	SM00105	arf_gap_3	coord: 14..135 e-value: 3.1E-41 score: 153.0
IPR001164	Arf GTPase activating protein	PFAM	PF01412	ArfGap	coord: 19..130 e-value: 2.5E-38 score: 130.6
IPR001164	Arf GTPase activating protein	PROSITE	PS50115	ARFGAP	coord: 17..135 score: 26.381
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 306..327
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 128..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 388..407
None	No IPR available	SUPERFAMILY	57863	ArfGap/RecO-like zinc finger	coord: 17..129

Blast

[Close]

BLAST of TCONS_00058728-protein vs. Swiss-Prot (Human)
Match: SMAP2 (Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 8.655e-52
Identity = 110/297 (37.04%), Postives = 153/297 (51.52%), Query Frame = 0

Query:   14 DKHHAILRELVQEPTNKTCAECLAKGPRWSSWSLGVFVCIRCAGIHRNLGVHISKMKSIDLDSWTPEQLQNVLRWGNKRAAEYYECYLPKDFTRPQATHALEAFIRNKYEKKLYIKKDGEPPENPQSKVDRLKNDSREDKEKDKKTTSTASRQRRAEKKVDLSKPATTASSNNTILNMAKTEPKKSSPATANTLSAEQHQKSHSMNDLLSLDHPTPTANAEVKHSAS-SNDLLNFGGWSDPVPAASSANADPFSSNTTTTSAQTNTDLFANAPAQTTPEAPAKSAKESILSLYGSST 309
            D++ A+L  L+ E  NK CA+C +KGPRW+SW++GVF+CIRCAGIHRNLGVHIS++KS++LD WT EQ+Q +   GN +A   YE YLP+ F RPQ   A+E FIR+KYEKK Y+ +  +     + K D+ K  S    EK K       + +  +KK D   P              K+ PK ++P                  DLL LD P   + A  K S +   DL        P  + S        +  +  S   N +LF    +++      + +K+SILSLYGS T
Sbjct:   10 DRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSLDINAFRKEKDDKWKRGSEPVPEK-KLEPVVFEKVKMPQKKEDPQLP-------------RKSSPKSTAPVM----------------DLLGLDAPVACSIANSKTSNTLEKDLDLLASVPSPSSSGSRKVVGSMPTAGSAGSVPENLNLFPEPGSKSEEIGKKQLSKDSILSLYGSQT 276

The following BLAST results are available for this feature:

BLAST of TCONS_00058728-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00058728-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SMAP2	8.655e-52	37.04	Stromal membrane-associated protein 2 OS=Homo sapi...	[more]

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TCONS_00058728-protein (polypeptide) - C. hemisphaerica