TCONS_00057080-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00057080-protein
Unique NameTCONS_00057080-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length182

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00057080-protein ID=TCONS_00057080-protein|Name=TCONS_00057080-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MPSRRTINRRLLSTQSHSISPAVSPAKQRPKLRLPTLKINKDCRLNLPSW
IKEQIQNDEYSGLRWVDEKKGHFLVSWKHASRQGWLEEEDGRLFKDWALY
TGVYKPGRDDPNPKQWKANFRCALNASAAITSVKGCGKTNGKDAHRVFKL
DKTYGGFVTKRNKGQRLKLNTKILSSSSQSSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_035958XLOC_035958Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00057080TCONS_00057080Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001346Interferon_reg_fact_DNA-bd_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0000975regulatory region DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0000975 regulatory region DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001346Interferon regulatory factor DNA-binding domainPRINTSPR00267INTFRNREGFCTcoord: 90..107
score: 47.32
coord: 72..85
score: 44.09
coord: 113..135
score: 44.98
coord: 46..65
score: 33.28
IPR001346Interferon regulatory factor DNA-binding domainSMARTSM00348irfvirus2coord: 40..153
e-value: 1.4E-29
score: 114.3
IPR001346Interferon regulatory factor DNA-binding domainPFAMPF00605IRFcoord: 47..150
e-value: 5.2E-33
score: 113.4
IPR001346Interferon regulatory factor DNA-binding domainPROSITEPS51507IRF_2coord: 44..152
score: 33.339
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 41..151
e-value: 2.4E-35
score: 120.4
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 44..150
NoneNo IPR availableCDDcd00103IRFcoord: 44..150
e-value: 2.68767E-29
score: 104.68

Blast
[Close]
BLAST of TCONS_00057080-protein vs. Swiss-Prot (Human)
Match: IRF2 (Interferon regulatory factor 2 OS=Homo sapiens GN=IRF2 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 5.475e-30
Identity = 46/107 (42.99%), Postives = 73/107 (68.22%), Query Frame = 0 
Query:   44 RLNLPSWIKEQIQNDEYSGLRWVDEKKGHFLVSWKHASRQGWLEEEDGRLFKDWALYTGVYKPGRDDPNPKQWKANFRCALNASAAITSVKGCGKTNGKDAHRVFKL 150
            R+ +  W++EQI ++   GL+W++++K  F + W HA+R GW  E+D  LF++WA++TG ++PG D P+PK WKANFRCA+N+   I  VK      G +A RV+++
Sbjct:    5 RMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRM 111
The following BLAST results are available for this feature:
BLAST of TCONS_00057080-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IRF25.475e-3042.99Interferon regulatory factor 2 OS=Homo sapiens GN=... [more]
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