TCONS_00056655-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056655-protein
Unique Name	TCONS_00056655-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	471

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056655-protein ID=TCONS_00056655-protein|Name=TCONS_00056655-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MAGGELTFSRNSPAENFLNREALEEPEVSDVEELKESLKNGLFDARRKIT
FLRKELKEKQDNLDVERSMRETAEKELANISMNGHRDHSTPNNGSPTRSL
RHSTKRLNRSSPSRLDQSRRGEERSVTPNLHLGNMETMIEELKSARLLNQ
TLTEKLSQAENELDQVLISKEEMEIELEASVTARGAALVDKLYTAQKVRE
DAMNVRMKLLIDEKEELQKRLRKLEKDHGFDSGVDTGSGLYDELQQDQLS
MNEVLGRLSSNGQSSNAIEYNGGTLIERLNQAQTTNKLKSSESFKQIKDE
RDQAVNQISNLKDELSEVQKERELYETQHRKNEKNRLKAIQNQLKAVINE
RDEAQERSLQLEDEIEKIRLQFSLKNSLSQEESLKHQFNTTLNDFEKRLQ
EKERELNLAQTSYDEMVEKLSASTREKNSLVKQLEDTREKLNDEQKRAER
SERLVEVLRRRKTISISDTID

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035681	XLOC_035681	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056655	TCONS_00056655	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 135..176
None	No IPR available	COILS	Coil	Coil	coord: 42..76
None	No IPR available	COILS	Coil	Coil	coord: 200..227
None	No IPR available	COILS	Coil	Coil	coord: 385..461
None	No IPR available	COILS	Coil	Coil	coord: 294..371
None	No IPR available	GENE3D	1.10.287.620		coord: 272..462 e-value: 5.4E-4 score: 19.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 422..449
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..129

Blast

[Close]

BLAST of TCONS_00056655-protein vs. Swiss-Prot (Human)
Match: MIPO1 (Mirror-image polydactyly gene 1 protein OS=Homo sapiens GN=MIPOL1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 4.576e-31
Identity = 94/326 (28.83%), Postives = 188/326 (57.67%), Query Frame = 0

Query:  138 MIEELKSARLLNQTLTEKLSQAENELDQVLISKEEMEIELEASVTARGAALVDKLYTAQKVREDAMNVRMKLLIDEKEELQKRLRKLEKDHGFDSGVDTGSGLYDELQQDQLSMNEVLGRLSSNGQSSNAIEYNGGTLIERLNQAQTTNKLKSSESFKQIKDERDQAVNQISNLKDELSEV--QKERELYETQHRKNEKNRLKAIQNQLKAVINERDEAQERSLQLEDEIEKIRLQFSLKNSLSQEESLKHQFNTTLNDFEKRLQEKERELNLAQTSYDEMVEKLSASTREKNSLVKQLEDTREKLNDEQKRAERSERLVEVLRRR 461
            +++EL   R  N+ L +KL++ + E  ++    E  E E EA +  + AALV+++Y AQK R++A+  R++L I+E++E   R + +E        ++         +++ +++ E+L R++ N  +  AI+ NG  +++R+ + +      ++E    + +ERD A+++   L+ EL  V  Q +      +H   E N+ +A++ +L ++   R+ A ++  +LE+EI+ +R+ +SL  SLSQEE+LK QFN TL+ +E+ L+ +E  +++ Q   +E+  +L  +  E+ ++  QL+  RE      ++ ++ ERLV+VLR++
Sbjct:  116 LLKELDILRTSNKKLQQKLAKEDKEQRKLKFKLELQEKETEAKIAEKTAALVEEVYFAQKERDEAVMSRLQLAIEERDEAIARAKHMEMSLKVLENINP--------EENDMTLQELLNRIN-NADTGIAIQKNGAIIVDRIYKTKECKMRITAEEMSALIEERDAALSKCKRLEQELHHVKEQNQTSANNMRHLTAENNQERALKAKLLSMQQARETAVQQYKKLEEEIQTLRVYYSLHKSLSQEENLKDQFNYTLSTYEEALKNRENIVSITQQQNEELATQLQQALTERANMELQLQHAREASQVANEKVQKLERLVDVLRKK 432

The following BLAST results are available for this feature:

BLAST of TCONS_00056655-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056655-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MIPO1	4.576e-31	28.83	Mirror-image polydactyly gene 1 protein OS=Homo sa...	[more]

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TCONS_00056655-protein (polypeptide) - C. hemisphaerica