TCONS_00056147-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00056147-protein
Unique Name	TCONS_00056147-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	281

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00056147-protein ID=TCONS_00056147-protein|Name=TCONS_00056147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
MPYREEDPPFEDNGLNNWCEELWKNDKNRLTPDQDYELDLQGRTRFSYDG
PDMAADPLFASVSREALARPTYKAFVALLDNYETATGVAEEVTPKELREN
WEFINACYKTDCMRLCYQYLKFKKIINKSPEEFKQELYDMWFKMYRRSRE
TRKFDSSGFEHVFVGETRGDKEVIGFHNWIQFYLQEKAKNVDYKGFMASD
RNPHLLTVQFSWKGEVKPKGGIFIGVSPEFELALYTVCYMLGEHSYKITL
GGEEVIIKCHQTAGKIGTCYPQLPRWQGRRK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_035349	XLOC_035349	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00056147	TCONS_00056147	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR018998	Endoribonuclease_XendoU

Vocabulary: **Molecular Function**
Term	Definition
GO:0016788	hydrolase activity, acting on ester bonds

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016788	hydrolase activity, acting on ester bonds

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018998	Endoribonuclease XendoU	PFAM	PF09412	XendoU	coord: 14..271 e-value: 1.1E-98 score: 329.7
None	No IPR available	SUPERFAMILY	142877	EndoU-like	coord: 11..273

Blast

[Close]

BLAST of TCONS_00056147-protein vs. Swiss-Prot (Human)
Match: ENDOU (Poly(U)-specific endoribonuclease OS=Homo sapiens GN=ENDOU PE=1 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.231e-44
Identity = 94/243 (38.68%), Postives = 136/243 (55.97%), Query Frame = 0

Query:   20 EELWKNDKNRLTPDQDYELDLQGRTRFSYDGPDMAADPLFASVSREALARPTYKAFVALLDNYETATGVAEEVTPKELRENWEFINACYKTDCMRLCYQYLKFKKIINKSPEEFKQELYDMWFKMYRRSRETRKFDSSGFEHVFVGETRGDKEVIGFHNWIQFYLQEKAKNVDYKGFMAS---DRNPHLLTVQFSWKGEVKPKGGIFIGVSPEFELALYTVCYMLGEHSY-KITLGGEEVIIK 258
            E++  N +N ++P +         TR   +  D    PLF  V+ +  ++PTY AF+ LL+NY+ ATG  E  + +EL E   F+    KT  M+  Y +L  +     S +EF  +L +MWF +Y R  E  + DSSGFEHVF GE +  K V GFHNWI+FYL+EK   VDY   +     D  P +L +QF+W G  K  G  FIG SPEFE ALY++C++       +++LGG  + ++
Sbjct:  159 EDIVLNSQNCISPSE---------TR---NQVDRCPKPLFTYVNEKLFSKPTYAAFINLLNNYQRATGHGEHFSAQELAEQDAFLREIMKTAVMKELYSFLHHQNRYG-SEQEFVDDLKNMWFGLYSRGNE--EGDSSGFEHVFSGEVKKGK-VTGFHNWIRFYLEEKEGLVDYYSHIYDGPWDSYPDVLAMQFNWDGYYKEVGSAFIGSSPEFEFALYSLCFIARPGKVCQLSLGGYPLAVR 385

The following BLAST results are available for this feature:

BLAST of TCONS_00056147-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00056147-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ENDOU	1.231e-44	38.68	Poly(U)-specific endoribonuclease OS=Homo sapiens ...	[more]

You are here

TCONS_00056147-protein (polypeptide) - C. hemisphaerica