TCONS_00055422-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055422-protein
Unique NameTCONS_00055422-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length376

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055422-protein ID=TCONS_00055422-protein|Name=TCONS_00055422-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MKEDTKVYLSRVCSGPLAEQWVNLEQLYDKKLYHELTIELLKFVKHEHFQ
QNGGLLELYENFLSTIEHRINPLSFTEIMLVISGEVKEYEKALELFSKVE
EKIKTCVEGKVLCLITKGSLHLKANKLDLTKEAIKSAETLLDTLDGVTTV
HARFYDLSSNYSKIVGAYNEFYKDALRYLGCLDITELKGDELRQRAFNLS
LAALLGNEVYNFGELLAHDVLEYLKGTEHAWLIDVLFAFNSGNIQKFLDM
KSKWAQQPDLAANETALLQKITLLCLMELAFSRKSTDRSFSFDAVAKETR
LPVNEVELLVMKALSLGLIKGTIDEVEKMIHITWVQPRVLDKDQIGKLRE
LIGLWGEKVKSSVYLVEEQVPELMVN
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034878XLOC_034878Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055422TCONS_00055422Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00753PINTcoord: 262..355
e-value: 1.3E-15
score: 67.9
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 262..355
e-value: 1.3E-15
score: 67.9
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 231..333
e-value: 8.9E-12
score: 45.3
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 288..341
e-value: 0.0031
score: 17.0
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 260..338

Blast
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BLAST of TCONS_00055422-protein vs. Swiss-Prot (Human)
Match: PSD13 (26S proteasome non-ATPase regulatory subunit 13 OS=Homo sapiens GN=PSMD13 PE=1 SV=2)

HSP 1 Score: 375.941 bits (964), Expect = 2.009e-129
Identity = 187/362 (51.66%), Postives = 253/362 (69.89%), Query Frame = 0 
Query:   14 SGP-LAEQWVNLEQLYDKKLYHELTIELLKFVKHEHFQQNGGLLELYENFLSTIEHRINPLSFTEIMLVISGEVKEYEKALELFSKVEEKIKTCVEGKVLCLITKGSLHLKANKLDLTKEAIKSAETLLDTLDGVTTVHARFYDLSSNYSKIVGAYNEFYKDALRYLGCLDITELKGDELRQRAFNLSLAALLGNEVYNFGELLAHDVLEYLKGTEHAWLIDVLFAFNSGNIQKFLDMKSKWAQQPDLAANETALLQKITLLCLMELAFSRKSTDRSFSFDAVAKETRLPVNEVELLVMKALSLGLIKGTIDEVEKMIHITWVQPRVLDKDQIGKLRELIGLWGEKVKSSVYLVEEQVPELM 374
            SGP     W  LE+LY KKL+H+LT+++L FV+   F Q  GL++LYENF+S  EHR+NPLS  EI+L +  ++ +   AL    K  EK+K+  E  +LC    G+L L    L +TKE I+  E +L+ L GVT+VH+RFYDLSS Y + +G +  +YKDALR+LGC+DI +L   E ++RAF L LA LLG  V+NFGELL H VLE L+ T+  WLID L+AFNSGN+++F  +K+ W QQPDLAANE  LL+KI LLCLME+ F+R +  R  +F+ +AK  ++ VNEVELLVMKALS+GL+KG+IDEV+K +H+TWVQPRVLD  QI  +++ +  W   VKS   LVE Q  +++
Sbjct:   14 SGPGQPAVWHRLEELYTKKLWHQLTLQVLDFVQDPCFAQGDGLIKLYENFISEFEHRVNPLSLVEIILHVVRQMTDPNVALTFLEKTREKVKSSDEAVILCKTAIGALKLNIGDLQVTKETIEDVEEMLNNLPGVTSVHSRFYDLSSKYYQTIGNHASYYKDALRFLGCVDIKDLPVSEQQERAFTLGLAGLLGEGVFNFGELLMHPVLESLRNTDRQWLIDTLYAFNSGNVERFQTLKTAWGQQPDLAANEAQLLRKIQLLCLMEMTFTRPANHRQLTFEEIAKSAKITVNEVELLVMKALSVGLVKGSIDEVDKRVHMTWVQPRVLDLQQIKGMKDRLEFWCTDVKSMEMLVEHQAHDIL 375
The following BLAST results are available for this feature:
BLAST of TCONS_00055422-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSD132.009e-12951.6626S proteasome non-ATPase regulatory subunit 13 OS... [more]
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