TCONS_00055171-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055171-protein
Unique NameTCONS_00055171-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055171-protein ID=TCONS_00055171-protein|Name=TCONS_00055171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
GVTCSFSSAVFFLLLLNCILFVSTNVDEVIDDGDENDRALGPSGYMKREY
SAIKPFVGGTSMQFWEMKGDSLLTDDYIRLTPDQQSKSGAVWNTLPVMVR
DWEVHVHFKVQGQNTRFFGDGFAFWYTKDRSELGPVFGAKDYHDGLSIFF
DTYANQNGEHSHEHPYISAQINNGTTHYDHDKDGTHSALAGCTAHFRGVD
AETHVAIRYLGSRKRLTVQHDMDDENKWAECFDRYGVELPTGYFLGFSSQ
TGDLSDNHDLISVKFYELASNDAEDDPAQYLNIQPKADGAEPERDHSEDD
KVYTRKDRALNWFLGIVLVLIAIALLGFFYYQKMQRDNMKRFY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034753XLOC_034753Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055171TCONS_00055171Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005052Lectin_leg
IPR013320ConA-like_dom
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.120.200coord: 42..277
e-value: 1.2E-58
score: 198.1
IPR005052Legume-like lectinPFAMPF03388Lectin_leg-likecoord: 45..268
e-value: 6.7E-84
score: 280.7
IPR005052Legume-like lectinPROSITEPS51328L_LECTIN_LIKEcoord: 44..268
score: 50.77
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 45..268

Blast
[Close]
BLAST of TCONS_00055171-protein vs. Swiss-Prot (Human)
Match: LMAN2 (Vesicular integral-membrane protein VIP36 OS=Homo sapiens GN=LMAN2 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 7.883e-84
Identity = 140/312 (44.87%), Postives = 194/312 (62.18%), Query Frame = 0 
Query:   41 GPSGYMKREYSAIKPF--VGGTSMQFWEMKGDSLLTDDYIRLTPDQQSKSGAVWNTLPVMVRDWEVHVHFKVQGQNTR-FFGDGFAFWYTKDRSELGPVFGAKDYHDGLSIFFDTYANQNGEHSHEHPYISAQINNGTTHYDHDKDGTHSALAGCTAHFRGVDAETHVAIRYLGSRKRLTVQHDMDDENKWAECFDRYGVELPTGYFLGFSSQTGDLSDNHDLISVKFYELASNDAEDDPA-QYLNIQPKADGAEPERDHSEDDKVYTRKDRALNWFLGIVLVLIAIAL-----LGFFYYQKMQRDNMKRFY 343
            G S ++KRE+S IKP+  VG +SM  W+ +G ++LT  Y+RLTPD++SK G++WN  P  ++DWE+HVHFKV G   +   GDG A WYT+DR   GPVFG+KD   GL+IF DTY N         PYIS  +NNG+  YDH KDG  + LAGCTA FR  D +T +A+RY  SR RLTV  D++D+N+W  C D  GV LPTGY+ G S+ TGDLSDNHD+IS+K ++L      D+ +  +  I+P  +  +  +D+ +D     R      W + ++L+   + +     +G   +QK Q  N KRFY
Sbjct:   49 GNSEHLKREHSLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDWEMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDE-TTERVFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRY--SRGRLTVMTDLEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMVEHTPDEESIDWTKIEPSVNFLKSPKDNVDDPTGNFRSGPLTGWRVFLLLLCALLGIVVCAVVGAVVFQKRQERN-KRFY 356
The following BLAST results are available for this feature:
BLAST of TCONS_00055171-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMAN27.883e-8444.87Vesicular integral-membrane protein VIP36 OS=Homo ... [more]
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