TCONS_00055069-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055069-protein
Unique NameTCONS_00055069-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055069-protein ID=TCONS_00055069-protein|Name=TCONS_00055069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
NNKRREMDFQNRAGGKTGSGGVASWSETNRDRRERLRQLALETIDLNKDP
YFMRNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQQNLARRAAKEAKEAP
NQPAPEKTKVSLRKFVKIGRPGYKVTKQRDPDTGQHSLLFQIDYPEIGEH
DPKHRFMSAYEQRIEPPDKAWQYLLVAAEPYETIGFKIPSREIDKHEQRF
WTHWNKDTKQFFLQFSFKLTHSQISAMQRENDQMHHNKNNRNSRPPPLRP
PPRHEGGGFGFPPRGPPPMRGMPPGGMMRGPPPRPPPNMNQGMPPRGPPP
QGPPLSMGGGPPPPMRGGPPPPMGGGPPRPPPSLMSLPTPPLPMGAAEFA
PPDNAPQQDDDVMDEGE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034693XLOC_034693Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055069TCONS_00055069Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR031781SF3A2_dom
IPR000690Matrin/U1-C_Znf_C2H2
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005634 nucleus
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01050CactinC_cactus_3coord: 97..223
e-value: 8.7E-28
score: 108.3
NoneNo IPR availablePFAMPF12874zf-metcoord: 60..84
e-value: 3.2E-6
score: 27.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 234..367
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 57..91
e-value: 2.5E-9
score: 47.0
IPR031781SF3A2 domainPFAMPF16835SF3A2coord: 118..211
e-value: 5.8E-40
score: 135.5
IPR000690Matrin/U1-C, C2H2-type zinc fingerPROSITEPS50171ZF_MATRINcoord: 60..90
score: 9.568
IPR013087Zinc finger C2H2-typeSUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 54..93

Blast
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BLAST of TCONS_00055069-protein vs. Swiss-Prot (Human)
Match: SF3A2 (Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF3A2 PE=1 SV=2)

HSP 1 Score: 343.969 bits (881), Expect = 9.520e-116
Identity = 181/214 (84.58%), Postives = 196/214 (91.59%), Query Frame = 0 
Query:    7 MDFQNRAGGKTGSGGVASWSETNRDRRERLRQLALETIDLNKDPYFMRNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQQNLARRAAKEAKEAPNQPAPEKTKVSLRKFVKIGRPGYKVTKQRDPDTGQHSLLFQIDYPEIGEHD-PKHRFMSAYEQRIEPPDKAWQYLLVAAEPYETIGFKIPSREIDKHEQRFWTHWNKDTKQFFLQFSFKL 219
            MDFQ+R GGKTGSGGVAS SE+NRDRRERLRQLALETID+NKDPYFM+NHLGSYECKLCLTLHNNEGSYLAHTQGKKHQ NLARRAAKEAKEAP QPAPEK KV ++KFVKIGRPGYKVTKQRD + GQ SLLFQIDYPEI E   P+HRFMSAYEQRIEPPD+ WQYLL+AAEPYETI FK+PSREIDK E +FWTHWN++TKQFFLQF FK+
Sbjct:    1 MDFQHRPGGKTGSGGVASSSESNRDRRERLRQLALETIDINKDPYFMKNHLGSYECKLCLTLHNNEGSYLAHTQGKKHQTNLARRAAKEAKEAPAQPAPEKVKVEVKKFVKIGRPGYKVTKQRDSEMGQQSLLFQIDYPEIAEGIMPRHRFMSAYEQRIEPPDRRWQYLLMAAEPYETIAFKVPSREIDKAEGKFWTHWNRETKQFFLQFHFKM 214
The following BLAST results are available for this feature:
BLAST of TCONS_00055069-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SF3A29.520e-11684.58Splicing factor 3A subunit 2 OS=Homo sapiens GN=SF... [more]
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