TCONS_00055033-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00055033-protein
Unique NameTCONS_00055033-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1197

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00055033-protein ID=TCONS_00055033-protein|Name=TCONS_00055033-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1197bp
MAVIRNRRRNSKTGRTRLSRCGLCDPCLKTEDCGKCRQCKNRLSGKQACK
FRKCLLISQIQASRRGQIAFEKGIRKSPPKFPPAYINDKCHVEKKKVCEY
PFKDTDTNYKTPSIVEPKLSRHESESELHKNVVSASQDGFSDLPPFRSFT
YMDVDVGVDSGIEVSPLKRKNQSESSTPVKVTKAKKGTRKLQRIEQQSCG
CSIDIDQQKTPFYTHLGSAPTIEVLHDNLSQRYSVAKEAIKIHLVSPTQV
EGKNGDGCPLARWVVRRSGPDEKYLVVVKQNEDHTCQHIVTVVVIVAWEG
ITENYADQMYEYLTTNLNEAGFSTRRRCGTNDSKTCMCQGANEESNGASF
TFGCSWSMYFDGCKFSKSTSARKFKMQNSVKEKYMESVLQTMATNVSPLL
RVLAPEAFNNMTQYESVASDCRIGNNTDGRPFSGVTCCLDFCAHSHKDQH
NMNDGTTMVCTLLKPEEQRNDEQLHVLPLYQLCDLQGTVLPPNYNIPEHF
LRSSLQSKKDPIEGKGRYVCPQAVNKKAKEEEIPSPAEDNKEKVKFVNEE
ILQNVFNDSMQAFNKFMNGDTDQLIPNSIWDEYQKVPDFPAEKPIHIKTE
DVPMSRTDNDPSITLKQENLEDSALTKPTIVTPDMGGVAIALGHGSFLIE
CAKKELHATTALQNPSRNQPTRLSMVFYQHKKLNRSQHGYHEYAEKAQQK
RLRQSHEETLVNSDASEFDSPMKQPSSHPDVAAPNVSMSHQHHPIESIFP
QQTIPSQVTPVPPTTVTISTKPNQQNTPQKHPSISTVNSSNTSPFSLQLT
PNGNQYHSVISPTTSQPSQPLIPNNRAACTTPTHPSAAFKAKQLANQQNP
NQSNSQTRSHPSNVLRANSLPNGQGSTLTSQGVSQNQPNISILSPTNSNS
NFSVDNLISPPVSHTTDQAMNSSANQPQYGLNGHIVHQNNITYNSLQNNQ
HISHQPYINSSVPQTNLPQQMNYNPATFDQRAYPEFNQPPTTLNLNHPHQ
PSIHQNNINKAHTLLDHHHEIMKTFSSGLIASPQETFLSPVNPLPDDLVK
AVQGKNVLPSPVNEHYNNTYNHHNHHNFNKNSSFPPPTFNPHINNIQGYH
NELPSNKFLKPPDPYSGHFQSTHNQHPQHHLLDMHANMFMRNYAQNGHQN
YAPNLPSSMMGGLPQQQMKQPIHPSLMRKHEKNLSAWPGVSNQMTPF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034666XLOC_034666Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00055033TCONS_00055033Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0247792OGFeDO_noxygenase_dom
IPR002857Znf_CXXC
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0247792OGFeDO, oxygenase domainSMARTSM01333Tet_JBP_2coord: 355..681
e-value: 1.9E-38
score: 143.8
IPR0247792OGFeDO, oxygenase domainPFAMPF12851Tet_JBPcoord: 355..484
e-value: 1.9E-44
score: 152.3
coord: 585..681
e-value: 4.9E-13
score: 49.0
IPR002857Zinc finger, CXXC-typePFAMPF02008zf-CXXCcoord: 16..54
e-value: 3.2E-6
score: 27.0
IPR002857Zinc finger, CXXC-typePROSITEPS51058ZF_CXXCcoord: 13..55
score: 11.413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 700..733
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 762..923
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..187

Blast
[Close]
BLAST of TCONS_00055033-protein vs. Swiss-Prot (Human)
Match: TET2 (Methylcytosine dioxygenase TET2 OS=Homo sapiens GN=TET2 PE=1 SV=3)

HSP 1 Score: 311.612 bits (797), Expect = 3.679e-87
Identity = 140/296 (47.30%), Postives = 203/296 (68.58%), Query Frame = 0 
Query:  198 SCGCSIDI-DQQKTPFYTHLGSAPTIEVLHDNLSQRYSVAKEAIKIHLVSPTQVEGKNGDGCPLARWVVRRSGPDEKYLVVVKQNEDHTCQHIVTVVVIVAWEGITENYADQMYEYLTTNLNEAGFSTRRRCGTNDSKTCMCQGANEESNGASFTFGCSWSMYFDGCKFSKSTSARKFKM--QNSVKEKYMESVLQTMATNVSPLLRVLAPEAFNNMTQYESVASDCRIGNNTDGRPFSGVTCCLDFCAHSHKDQHNMNDGTTMVCTLLKPEEQR-----NDEQLHVLPLYQLCDL 485
            SC C   I ++ + PFYTHLG+ P +  + + + +R+    +AI+I  V  T  EGK+  GCP+A+WVVRRS  +EK L +V++   HTC+  V V++I+ WEGI  + AD++Y  LT  L + G  T RRC  N+ +TC CQG + E+ GASF+FGCSWSMY++GCKF++S   RKFK+   +  +E+ +ES LQ ++T ++P  + LAP+A+NN  +YE  A +CR+G   +GRPFSGVT CLDFCAH+H+D HNM +G+T+VCTL + + +       DEQLHVLPLY++ D+
Sbjct: 1132 SCRCVEQIIEKDEGPFYTHLGAGPNVAAIREIMEERFGQKGKAIRIERVIYTGKEGKSSQGCPIAKWVVRRSSSEEKLLCLVRERAGHTCEAAVIVILILVWEGIPLSLADKLYSELTETLRKYGTLTNRRCALNEERTCACQGLDPETCGASFSFGCSWSMYYNGCKFARSKIPRKFKLLGDDPKEEEKLESHLQNLSTLMAPTYKKLAPDAYNNQIEYEHRAPECRLGLK-EGRPFSGVTACLDFCAHAHRDLHNMQNGSTLVCTLTREDNREFGGKPEDEQLHVLPLYKVSDV 1426

HSP 2 Score: 95.1301 bits (235), Expect = 1.474e-19
Identity = 43/80 (53.75%), Postives = 60/80 (75.00%), Query Frame = 0 
Query:  617 QENLEDSALTKPTIVTPDMGGVAIALGHGSFLIECAKKELHATTALQNPSRNQPTRLSMVFYQHKKLNRSQHGYHEYAEK 696
            ++N E  + ++ + + PD+GGVA+A  HGS LIECAK+ELHATT L+NP+RN PTR+S+VFYQHK +N  +HG   +  K
Sbjct: 1841 EDNDEVWSDSEQSFLDPDIGGVAVAPTHGSILIECAKRELHATTPLKNPNRNHPTRISLVFYQHKSMNEPKHGLALWEAK 1920
The following BLAST results are available for this feature:
BLAST of TCONS_00055033-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TET23.679e-8747.30Methylcytosine dioxygenase TET2 OS=Homo sapiens GN... [more]
back to top