TCONS_00054997-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054997-protein
Unique Name	TCONS_00054997-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	546

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054997-protein ID=TCONS_00054997-protein|Name=TCONS_00054997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp
MPFRRKNRPAYAGRRKQRAEQLVTADSECCFCHQGLNEECGLFFNDVEAK
IAAHQFCLFFSSGLPQLGEDTEGFDGFLYKDIIKEAQRANKILCKFCQQP
GASVGCSLKTCRTSYHYLCGWKQGLQFVFHDCFDSFCKAHCSKQDLSALK
DKTQEHLCPLCLEDVTRHVNKIIKTPCCKNMFVHRECVQTQANNAGYFFR
CPTCNNQELFQKEMSTFGVYIPQRDAAWEKNNAFGDLLESYDKCDSAECR
CPFGKSHIEDEGDWDLLRCYHCGQSGVHRACLGADVTPEYEFVCRDCNDV
VGVNKINSVVSPERHGERWEQHKLLLKQLRQKKDPILLSCGMPSVLRELH
GVTKQCRVVINPLPVFLIDRLQRRRVISTRSLIQNYGITVTNPPPPRAWP
PKMRKPRGKQRRRVCNANIARRKKLEGQTSTISTLPVPSTIQVTHSHTGN
TLPAQSASPLSNIHLPKDNVNKTPSPSRCANGNRPSETSKTQTDSPSSNS
QDSPTLSKTAARILSAISSPFTCHDEKSNILIWKPSAFETFITAQR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034654	XLOC_034654	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054997	TCONS_00054997	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001965	Znf_PHD
IPR013083	Znf_RING/FYVE/PHD
IPR019786	Zinc_finger_PHD-type_CS
IPR034732	EPHD
IPR011011	Znf_FYVE_PHD

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001965	Zinc finger, PHD-type	SMART	SM00249	PHD_3	coord: 248..298 e-value: 1.7 score: 15.0 coord: 157..205 e-value: 20.0 score: 2.6 coord: 93..141 e-value: 3.4 score: 11.5
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 86..127 e-value: 0.25 score: 10.7
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 134..209 e-value: 1.2E-9 score: 37.8 coord: 223..302 e-value: 3.5E-20 score: 71.6
None	No IPR available	PFAM	PF13771	zf-HC5HC2H	coord: 54..140 e-value: 2.7E-14 score: 53.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 443..507
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 393..412
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 418..437
IPR019786	Zinc finger, PHD-type, conserved site	PROSITE	PS01359	ZF_PHD_1	coord: 249..297
IPR034732	Extended PHD (ePHD) domain	PROSITE	PS51805	EPHD	coord: 26..141 score: 20.607
IPR011011	Zinc finger, FYVE/PHD-type	SUPERFAMILY	57903	FYVE/PHD zinc finger	coord: 222..303

Blast

[Close]

BLAST of TCONS_00054997-protein vs. Swiss-Prot (Human)
Match: G2E3 (G2/M phase-specific E3 ubiquitin-protein ligase OS=Homo sapiens GN=G2E3 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 1.542e-57
Identity = 110/281 (39.15%), Postives = 171/281 (60.85%), Query Frame = 0

Query:   29 CCFCHQGLNEECGLFFNDVEAK----IAAHQFCLFFSSGLPQLGEDTEGFDGFLYKDIIKEAQRANKILCKFCQQPGASVGCSLKTCRTSYHYLCGWKQGLQFVFHDCFDSFCKAHCSKQDLSALKDKTQEHL-CPLCLEDVTRHVN-KIIKTPCCKNMFVHRECVQTQANNAG-YFFRCPTCNNQELFQKEMSTFGVYIPQRDAAWE-KNNAFGDLLESYDKCDSAECRCPFGKSHIEDEGDWDLLRCYHCGQSGVHRACLGADVTPEYEFVCRDCNDVV 301
            C FC +  +++C   + + + K    +  H +CL  SSG+ Q G++ EG  GFL +DI KE  RA+K+ C  C++ GAS+GC    C+ SYH+ CG ++   F F   F SFC  H   Q +++  +  +E L C +CLE +    +  I+++PCCKN + HR+C+Q QA NAG +FFRC  CNN ++FQKEM   G++IP++DA+WE + NA+ +LL+ Y++CD   CRC  G+ +   +  W++ RC  CG SG H AC  +  + E  + C +C  ++
Sbjct:   14 CVFCRK--HDDCPNKYGEKKTKEKWNLTVHYYCLLMSSGIWQRGKEEEGVYGFLIEDIRKEVNRASKLKCCVCKKNGASIGCVAPRCKRSYHFPCGLQRECIFQFTGNFASFCWDHRPVQIITS--NNYRESLPCTICLEFIEPIPSYNILRSPCCKNAWFHRDCLQVQAINAGVFFFRCTICNNSDIFQKEMLRMGIHIPEKDASWELEENAYQELLQHYERCDVRRCRCKEGRDYNAPDSKWEIKRCQCCGSSGTHLAC-SSLRSWEQNWECLECRGII 289

The following BLAST results are available for this feature:

BLAST of TCONS_00054997-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054997-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
G2E3	1.542e-57	39.15	G2/M phase-specific E3 ubiquitin-protein ligase OS...	[more]

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TCONS_00054997-protein (polypeptide) - C. hemisphaerica