TCONS_00054977-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054977-protein
Unique NameTCONS_00054977-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length123

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054977-protein ID=TCONS_00054977-protein|Name=TCONS_00054977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MVAQKPRKSKKKSTLIFNIDCSLPVEDGIMKVDDLKTFLSSKIKVEGKLN
NLEQISLDVNKNKVTITADRQFSKRYLKYLTKKYLKKNNLRDWLRVVAST
HTDYELRYFQINNDEEEDDDDNE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034640XLOC_034640Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054977TCONS_00054977Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002671Ribosomal_L22e
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002671Ribosomal protein L22ePFAMPF01776Ribosomal_L22ecoord: 13..118
e-value: 2.3E-42
score: 143.7

Blast
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BLAST of TCONS_00054977-protein vs. Swiss-Prot (Human)
Match: RL22L (60S ribosomal protein L22-like 1 OS=Homo sapiens GN=RPL22L1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 1.194e-31
Identity = 70/123 (56.91%), Postives = 89/123 (72.36%), Query Frame = 0 
Query:    1 MVAQKPRKSKKKSTLIFNIDCSLPVEDGIMKVDDLKTFLSSKIKVEGKLNNLEQI-SLDVNKNKVTITADRQFSKRYLKYLTKKYLKKNNLRDWLRVVASTHTDYELRYFQINNDEEEDDDDN 122
            M  QK RK K+ ST  FN+D + PVEDGI    + + FL  K+KV GK  NL  +  ++  KNK+T+ +++QFSKRYLKYLTKKYLKKNNLRDWLRVVAS    YELRYFQI+ DE+E + ++
Sbjct:    1 MAPQKDRKPKR-STWRFNLDLTHPVEDGIFDSGNFEQFLREKVKVNGKTGNLGNVVHIERFKNKITVVSEKQFSKRYLKYLTKKYLKKNNLRDWLRVVASDKETYELRYFQISQDEDESESED 122
The following BLAST results are available for this feature:
BLAST of TCONS_00054977-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL22L1.194e-3156.9160S ribosomal protein L22-like 1 OS=Homo sapiens G... [more]
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