TCONS_00054959-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054959-protein
Unique NameTCONS_00054959-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054959-protein ID=TCONS_00054959-protein|Name=TCONS_00054959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=726bp
MGEEAPPKYYGYEENLMHGRYNSSMADYTKEYSKKLKYNTEDDDLISEFD
AEHSMRSYSQSRERSCWRLSYHWKKIRPVLANDYSFLLILGILMALISFG
LDYVIQKFQLAQILLYKMVAFSTVLQYILWVGFPLLLICFSVGFVHLVSP
HAIGSGIPEMKVILRGTVLKRYLSFQTFIAKTVGLMTALGSGIPIGKEGP
FVHVSSIVARMLSKFIKGFHGIYVNEARNVDMLACACALGVSSSFAAPIG
GVLFAIEVTSTYFAVRNYWRGFFTAVCGAFMFRLLAVLDSTEETITALFK
TTFNIDFPFDVQEFVAFGFIGLTCGLAGALFVYTHRKIVDFSQRHEASKF
NRFLAKSRFIYPAMIVIVVSTLSFPKGFGMFMAGQLTPKEAVVQLFSNST
WTSNPSSDSEKYLLYWRTEYSNVYMTLVIFILVKFILTALCIALPIPAGA
FFPVFVIGAAYGRLVGECMATWFPDGIRSGSGASSPVLPGGYAVVGAAAM
AGAVTHTISTSVIVFELTGQITHILPVMVAVLIANAVVQPLQPSIYDSII
EIKKLPNIPDIKRTRHYNVCAGDIMQTSILYTSMTGTYMAIRDLLKKSPH
TSFPLVDKPEGMILLGSVRRPQLEWMLQRHLLNGQMRNDNTDGPDGNARH
ASVHFSSGGEVSIKNLQAQQRPKKKTFGSKLKTGTTAHPVSLQRLFNTST
SEMGESVATHDFSVDNSQVRTEHFVW
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034633XLOC_034633Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054959TCONS_00054959Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001807Cl-channel_volt-gated
IPR014743Cl-channel_core
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006821chloride transport
GO:0055085transmembrane transport
Vocabulary: Molecular Function
TermDefinition
GO:0005247voltage-gated chloride channel activity
GO:0005216ion channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006821 chloride transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005247 voltage-gated chloride channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001807Chloride channel, voltage gatedPRINTSPR00762CLCHANNELcoord: 507..526
score: 57.5
coord: 181..200
score: 53.7
coord: 490..506
score: 64.35
coord: 238..257
score: 65.7
coord: 545..559
score: 44.53
coord: 446..466
score: 60.19
coord: 150..167
score: 64.44
IPR001807Chloride channel, voltage gatedPFAMPF00654Voltage_CLCcoord: 138..539
e-value: 8.8E-85
score: 284.9
NoneNo IPR availableGENE3D3.10.580.10coord: 566..708
e-value: 2.3E-7
score: 30.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 663..683
NoneNo IPR availableCDDcd03683ClC_1_likecoord: 83..560
e-value: 0.0
score: 556.475
NoneNo IPR availableSUPERFAMILY54631CBS-domain paircoord: 561..632
IPR014743Chloride channel, coreGENE3D1.10.3080.10coord: 75..560
e-value: 3.7E-144
score: 480.4
IPR014743Chloride channel, coreSUPERFAMILY81340Clc chloride channelcoord: 68..559

Blast
[Close]
BLAST of TCONS_00054959-protein vs. Swiss-Prot (Human)
Match: CLCN2 (Chloride channel protein 2 OS=Homo sapiens GN=CLCN2 PE=1 SV=2)

HSP 1 Score: 612.068 bits (1577), Expect = 0.000e+0
Identity = 333/643 (51.79%), Postives = 440/643 (68.43%), Query Frame = 0 
Query:    7 PKYYGYEENLMHGRYNSSMADYTKEYSKKLKYN-TEDDDLISEFDAEHSMRSYSQSRERSCWRLSYHWKK-IRPVLANDYSFLLILGILMALISFGLDYVIQKFQLAQILLYKMVAFSTVLQYILWVGFPLLLICFSVGFVHLVSPHAIGSGIPEMKVILRGTVLKRYLSFQTFIAKTVGLMTALGSGIPIGKEGPFVHVSSIVARMLSKFIKGFHGIYVNEARNVDMLACACALGVSSSFAAPIGGVLFAIEVTSTYFAVRNYWRGFFTAVCGAFMFRLLAVLDSTEETITALFKTTFNIDFPFDVQEFVAFGFIGLTCGLAGALFVYTHRKIVDFSQRHEASKFNRFLAKSRFIYPAMIVIVVSTLSFPKGFGMFMAGQLTPKEAVVQLFSNSTWTSN-------PSSDSEKYLLYWRTEYSNVYMTLVIFILVKFILTALCIALPIPAGAFFPVFVIGAAYGRLVGECMATWFPDGIRSGSGASSPVLPGGYAVVGAAAMAGAVTHTISTSVIVFELTGQITHILPVMVAVLIANAVVQPLQPSIYDSIIEIKKLPNIPDIKRTRH--YNVCAGDIMQTSILYTSMTGTYMAIRDLLKKSPHTSFPLVDKPEGMILLGSVRRPQLEWMLQRHLLNGQMRN 638
            P+   YE+ LM+GRY   +  + KE + +++    E         A   +  Y +SR   C   S    K +   +  D+ FL++LG+LMAL+S+ +DY I     AQ  + + +  S +LQY+ WV +P++LI FS GF  +++P A+GSGIPEMK ILRG VLK YL+ +TFIAK +GL  ALGSG+P+GKEGPFVH++S+ A +LSKF+  F GIY NE+RN +MLA ACA+GV   FAAPIGGVLF+IEVTST+FAVRNYWRGFF A   AF+FR+LAV +  EETITALFKT F +DFPFD+QE  AF  IG+  G  GALFVY +RKIV   ++ +    NRFL + R ++PA++ +++STL+FP GFG FMAGQL+ KE +V LF N TW          P S S+     W    +NV++TLVIFIL+KF ++AL   +P+P GAF PVFVIGAA+GRLVGE MA WFPDGI + S ++  ++PGGYAVVGAAA+AGAVTHT+ST+VIVFELTGQI HILPVM+AV++ANAV Q LQPS+YDSII IKKLP +P++   RH  Y V   DIM   + + +++ T+  +R  L ++      LV+ PE MILLGS+ R Q+  +L   L   + R 
Sbjct:   12 PRALQYEQTLMYGRYTQDLGAFAKEEAARIRLGGPEPWKGPPSSRAAPELLEYGRSRCARCRVCSVRCHKFLVSRVGEDWIFLVLLGLLMALVSWVMDYAIAACLQAQQWMSRGLNTSILLQYLAWVTYPVVLITFSAGFTQILAPQAVGSGIPEMKTILRGVVLKEYLTLKTFIAKVIGLTCALGSGMPLGKEGPFVHIASMCAALLSKFLSLFGGIYENESRNTEMLAAACAVGVGCCFAAPIGGVLFSIEVTSTFFAVRNYWRGFFAATFSAFIFRVLAVWNRDEETITALFKTRFRLDFPFDLQELPAFAVIGIASGFGGALFVYLNRKIVQVMRKQKT--INRFLMRKRLLFPALVTLLISTLTFPPGFGQFMAGQLSQKETLVTLFDNRTWVRQGLVEELEPPSTSQA----WNPPRANVFLTLVIFILMKFWMSALATTIPVPCGAFMPVFVIGAAFGRLVGESMAAWFPDGIHTDS-STYRIVPGGYAVVGAAALAGAVTHTVSTAVIVFELTGQIAHILPVMIAVILANAVAQSLQPSLYDSIIRIKKLPYLPELGWGRHQQYRVRVEDIMVRDVPHVALSCTFRDLRLALHRTKGRMLALVESPESMILLGSIERSQVVALLGAQLSPARRRQ 647
The following BLAST results are available for this feature:
BLAST of TCONS_00054959-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLCN20.000e+051.79Chloride channel protein 2 OS=Homo sapiens GN=CLCN... [more]
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