TCONS_00054802-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054802-protein
Unique NameTCONS_00054802-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054802-protein ID=TCONS_00054802-protein|Name=TCONS_00054802-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp
MDENWDAEIKGTAPVNNFQNLSISQPKPNNSSKYFDDDYNNDTRDDENSF
NGFGSHISFDGGRGGRGRGRGRGRGRGRGFGADNWRNERSPPPRNGFVNS
DSGSQQGNGFGRSSNGFGESSGDALTMIVLTEYVGKIIGRGGSKIKEIQA
ESGARVRIDKSQESGYDTVVEITGTEEQKQKAKQIIEDLTIPAGDYQRWG
EREARKNNVQTNDSAPAPINWGELKRQNDEFQAAKFADLVQIKKNFYREN
KKIATMDPLDVAAIRAKKNNISAIDLSDLNRPIPNPVLSFEDAFTDFPEI
LETIYDNRFTEPSPVQSQAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIH
IDEQITPRKERSGPTCLVLSPTRELAQQIEMEVKKYSYRGIRSVCIYGGG
DRREQIQMVKRGVEIIIGTPGRLNDLLMNNFYSVRDVSYLVLDEADRMLD
MGFEPEIKKILMDIRPDRQTIMTSATWPPEVQRMADQYLKNPLRVNVGSL
DLQACHSVTQLIEFIESENKQARLHEFVASMGPDDKLIVFVGRKVTADDI
SSNFAMYGERDFGIQSIHGNRDQADREQALQDMKTGAARVLIATDVASRG
LDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGVALTFVTREDWMHVG
KLIPILEEAGQEIPEELIEMSERARKNRERRLDEKNRERGMVGDRTRSGC
YNCGKEGHMSRECPEQSRRGGRGGGRGGGRGGGRGRRERGGGISIGRSDF
A
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034523XLOC_034523Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054802TCONS_00054802Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR014001Helicase_ATP-bd
IPR004087KH_dom
IPR001650Helicase_C
IPR011545DEAD/DEAH_box_helicase_dom
IPR004088KH_dom_type_1
IPR000629RNA-helicase_DEAD-box_CS
IPR014014RNA_helicase_DEAD_Q_motif
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO:0003723RNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 668..688
NoneNo IPR availableGENE3D3.40.50.300coord: 183..513
e-value: 3.1E-60
score: 203.0
NoneNo IPR availableGENE3D3.40.50.300coord: 514..669
e-value: 6.0E-41
score: 139.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..117
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 703..751
NoneNo IPR availablePROSITEPS50084KH_TYPE_1coord: 122..186
score: 17.401
NoneNo IPR availableCDDcd00079HELICccoord: 508..640
e-value: 7.24932E-31
score: 117.339
NoneNo IPR availableCDDcd00268DEADccoord: 294..496
e-value: 3.65049E-93
score: 290.54
NoneNo IPR availableCDDcd00105KH-Icoord: 125..187
e-value: 4.24292E-17
score: 76.0595
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 699..715
e-value: 1.5E-6
score: 37.7
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 699..715
e-value: 1.0E-7
score: 31.6
IPR001878Zinc finger, CCHC-typeGENE3D4.10.60.10coord: 674..739
e-value: 2.7E-8
score: 33.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 700..715
score: 11.795
IPR001878Zinc finger, CCHC-typeSUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 692..719
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 308..511
e-value: 4.0E-64
score: 229.0
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 320..495
score: 32.377
IPR004087K Homology domainSMARTSM00322kh_6coord: 121..191
e-value: 4.7E-15
score: 66.0
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 544..632
e-value: 3.4E-27
score: 106.3
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 522..632
e-value: 6.3E-25
score: 87.6
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 507..671
score: 22.295
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 314..483
e-value: 4.7E-48
score: 163.2
IPR004088K Homology domain, type 1GENE3D3.30.1370.10coord: 123..182
e-value: 2.2E-17
score: 62.3
IPR004088K Homology domain, type 1PFAMPF00013KH_1coord: 126..188
e-value: 5.6E-16
score: 58.0
IPR004088K Homology domain, type 1SUPERFAMILY54791Eukaryotic type KH-domain (KH-domain type I)coord: 126..192
IPR000629ATP-dependent RNA helicase DEAD-box, conserved sitePROSITEPS00039DEAD_ATP_HELICASEcoord: 441..449
IPR014014RNA helicase, DEAD-box type, Q motifPROSITEPS51195Q_MOTIFcoord: 289..317
score: 7.635
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 363..648

Blast
[Close]
BLAST of TCONS_00054802-protein vs. Swiss-Prot (Human)
Match: DDX43 (Probable ATP-dependent RNA helicase DDX43 OS=Homo sapiens GN=DDX43 PE=2 SV=2)

HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 285/578 (49.31%), Postives = 402/578 (69.55%), Query Frame = 0 
Query:  125 LTMIVLTEYVGKIIGRGGSKIKEIQAESGARVRIDKSQESGYDTVVEITGTEEQKQKAKQIIEDLT------------IPAGDYQRWGEREARKNNVQTNDSAPAPINWGELKRQNDEFQAAKFADLVQIKKNFYRENKKIATMDPLDVAAIRAKKNNISAIDLSD-LNRPIPNPVLSFEDAFTDFPEILETIYDNRFTEPSPVQSQAWPVLLSGMDCIGIAQTGTGKTLAFLLPAFIHIDEQITPRKERSGPTCLVLSPTRELAQQIEMEVKKYSYRGIRSVCIYGGGDRREQIQMVKRGVEIIIGTPGRLNDLLMNNFYSVRDVSYLVLDEADRMLDMGFEPEIKKILMDIRPDRQTIMTSATWPPEVQRMADQYLKNPLRVNVGSLDLQACHSVTQLIEFIESENKQARLHEFVASMGPDDKLIVFVGRKVTADDISSNFAMYGERDFGIQSIHGNRDQADREQALQDMKTGAARVLIATDVASRGLDIKDLTHVLNYDFPRHIEDYVHRIGRTGRAGRSGVALTFVTREDWMHVGKLIPILEEAGQEIPEELIEMSERARKNRERRLDEKNRER 689
            L   + + +VG +IGRGGSKIK IQ+ +   ++I + Q    +++V+I G++  + KAK +I++              I        G+  +  NNV   D     I+W +++ +  ++Q  K+ADL  IKKNFY+E+   + M  ++  + R +  NI+  DL D   RPIPNP  +F+DAF  +PE++E I    F +P+P+QSQAWP++L G+D IG+AQTGTGKTL +L+P FIH+  Q + + +R+ P  LVL+PTRELA Q+E E  KYSY+G+RSVC+YGGG+R EQI+ +K+GV+III TPGRLNDL M+NF ++++++YLVLDEAD+MLDMGFEP+I KIL+D+RPDRQT+MTSATWP  V R+A  YLK P+ V VG+LDL A  SV Q I     E K + +  F+ SM   DK+IVFV RK  AD +SS+  +    +  ++S+HG+R+Q DRE+AL++ KTG  R+LIATD+ASRGLD+ D+THV N+DFPR+IE+YVHRIGRTGRAGR+GV++T +TR DW    +LI ILE A Q IPEEL+ M+ER + ++++R  E+  ER
Sbjct:   70 LCFALKSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQP---ESLVKIFGSKAMQTKAKAVIDNFVKKLEENYNSECGIDTAFQPSVGKDGSTDNNVVAGDRPL--IDWDQIREEGLKWQKTKWADLPPIKKNFYKESTATSAMSKVEADSWRKENFNITWDDLKDGEKRPIPNPTCTFDDAFQCYPEVMENIKKAGFQKPTPIQSQAWPIVLQGIDLIGVAQTGTGKTLCYLMPGFIHLVLQPSLKGQRNRPGMLVLTPTRELALQVEGECCKYSYKGLRSVCVYGGGNRDEQIEELKKGVDIIIATPGRLNDLQMSNFVNLKNITYLVLDEADKMLDMGFEPQIMKILLDVRPDRQTVMTSATWPHSVHRLAQSYLKEPMIVYVGTLDLVAVSSVKQNIIVTTEEEKWSHMQTFLQSMSSTDKVIVFVSRKAVADHLSSDLIL---GNISVESLHGDREQRDREKALENFKTGKVRILIATDLASRGLDVHDVTHVYNFDFPRNIEEYVHRIGRTGRAGRTGVSITTLTRNDWRVASELINILERANQSIPEELVSMAERFKAHQQKREMERKMER 639
The following BLAST results are available for this feature:
BLAST of TCONS_00054802-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DDX430.000e+049.31Probable ATP-dependent RNA helicase DDX43 OS=Homo ... [more]
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