TCONS_00054623-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00054623-protein
Unique Name	TCONS_00054623-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	191

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00054623-protein ID=TCONS_00054623-protein|Name=TCONS_00054623-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
XVKAGVHMAKEKFGELNALVNCAGIGIAVTTLDKKGAAHPLDLFEKVINV
NLVGSFNCIRILAEEMATNEPDVDGGRGVMINTASCAAFEGQRGQAAYSA
SKGGIVGMTIPIARDLAKHGIRVNTIAPGLFLTPLLESLPDKVQNALAKT
VPFPQRLGHPDEFAQMAEQIIDNRMMNGSTVRLDGAIRMQP

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_034416	XLOC_034416	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00054623	TCONS_00054623	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR020904	Sc_DH/Rdtase_CS
IPR016040	NAD(P)-bd_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0016491	oxidoreductase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 14..25 score: 47.49 coord: 78..86 score: 41.75 coord: 98..117 score: 39.25
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 14..25 score: 48.56 coord: 98..117 score: 39.26 coord: 153..173 score: 19.43 coord: 72..88 score: 28.87 coord: 119..136 score: 44.59
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 2..141 e-value: 7.2E-31 score: 107.1
None	No IPR available	GENE3D	3.40.50.720		coord: 1..191 e-value: 9.5E-40 score: 136.0
IPR020904	Short-chain dehydrogenase/reductase, conserved site	PROSITE	PS00061	ADH_SHORT	coord: 85..113
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 2..188

Blast

[Close]

BLAST of TCONS_00054623-protein vs. Swiss-Prot (Human)
Match: HCD2 (3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sapiens GN=HSD17B10 PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 4.080e-82
Identity = 122/191 (63.87%), Postives = 147/191 (76.96%), Query Frame = 0

Query:    2 VKAGVHMAKEKFGELNALVNCAGIGIAVTTLD-KKGAAHPLDLFEKVINVNLVGSFNCIRILAEEMATNEPDVDGGRGVMINTASCAAFEGQRGQAAYSASKGGIVGMTIPIARDLAKHGIRVNTIAPGLFLTPLLESLPDKVQNALAKTVPFPQRLGHPDEFAQMAEQIIDNRMMNGSTVRLDGAIRMQP 191
            V+  + +AK KFG ++  VNCAGI +A  T + KKG  H L+ F++V++VNL+G+FN IR++A EM  NEPD  G RGV+INTAS AAFEGQ GQAAYSASKGGIVGMT+PIARDLA  GIRV TIAPGLF TPLL SLP+KV N LA  VPFP RLG P E+A + + II+N  +NG  +RLDGAIRMQP
Sbjct:   71 VQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLFGTPLLTSLPEKVCNFLASQVPFPSRLGDPAEYAHLVQAIIENPFLNGEVIRLDGAIRMQP 261

The following BLAST results are available for this feature:

BLAST of TCONS_00054623-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00054623-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HCD2	4.080e-82	63.87	3-hydroxyacyl-CoA dehydrogenase type-2 OS=Homo sap...	[more]

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TCONS_00054623-protein (polypeptide) - C. hemisphaerica