TCONS_00054367-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054367-protein
Unique NameTCONS_00054367-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length242

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054367-protein ID=TCONS_00054367-protein|Name=TCONS_00054367-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MEDLSEDEFDDYDGKNADSQFDLTYKAIVIGESQVGKTALVKRYKNPNSK
LPNLLPTIGIDFRAVDKVIDGLKIRVQLWDTAGQERFRTMTKSFFRGARG
VLLLYDVTERKSFLRVEEWVRNIKDFDLDKEEVFLIGNKIDLDFREITYE
EGKSLANQYGFKYFETSALTGENVESTIDKLVYNMKDSSNPFQKGNICVV
NGQEWEQVSSKDVRNDTVRLNHHKQQQQKHNQKTGGGSCGCG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034278XLOC_034278Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054367TCONS_00054367Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR005225Small_GTP-bd_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 129..142
score: 43.09
coord: 25..46
score: 39.34
coord: 49..65
score: 26.54
coord: 67..89
score: 48.19
coord: 163..185
score: 33.1
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 25..188
e-value: 4.8E-58
score: 208.8
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 22..188
e-value: 1.4E-15
score: 67.7
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 9..189
e-value: 0.0063
score: -1.8
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 27..184
e-value: 3.0E-8
score: -12.8
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 30..234
e-value: 0.0018
score: 1.1
NoneNo IPR availableGENE3D3.30.70.1390coord: 23..89
e-value: 9.5E-20
score: 69.9
NoneNo IPR availableGENE3D3.40.50.300coord: 90..186
e-value: 5.0E-30
score: 103.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..242
NoneNo IPR availablePROSITEPS51419RABcoord: 20..239
score: 26.121
NoneNo IPR availableCDDcd00154Rabcoord: 25..182
e-value: 3.89149E-65
score: 200.76
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 26..185
e-value: 1.6E-46
score: 157.7
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 25..180
e-value: 9.5E-24
score: 82.0
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 22..189

Blast
[Close]
BLAST of TCONS_00054367-protein vs. Swiss-Prot (Human)
Match: RAB3A (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.638e-44
Identity = 71/169 (42.01%), Postives = 113/169 (66.86%), Query Frame = 0 
Query:   15 KNADSQFDLTYKAIVIGESQVGKTALVKRYKNPNSKLPNLLPTIGIDFRAVDKVIDGLKIRVQLWDTAGQERFRTMTKSFFRGARGVLLLYDVTERKSFLRVEEWVRNIKDFDLDKEEVFLIGNKIDL-DFREITYEEGKSLANQYGFKYFETSALTGENVESTIDKLV 182
            +++D  FD  +K ++IG S VGKT+ + RY + +S  P  + T+GIDF+      +  +I++Q+WDTAGQER+RT+T +++RGA G +L+YD+T  +SF  V++W   IK +  D  +V L+GNK D+ D R ++ E G+ LA+  GF++FE SA    NV+ T ++LV
Sbjct:   13 ESSDQNFDYMFKILIIGNSSVGKTSFLFRYAD-DSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 180
The following BLAST results are available for this feature:
BLAST of TCONS_00054367-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB3A1.638e-4442.01Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
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