TCONS_00054348-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00054348-protein
Unique NameTCONS_00054348-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length263

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00054348-protein ID=TCONS_00054348-protein|Name=TCONS_00054348-protein|organism=Clytia hemisphaerica|type=polypeptide|length=263bp
MAALGPVITMYQTLVKEWSKKPVNLDNVGNMLTKMKLALMELQFMPTSGT
TPSAQELIVARDVLEIGVQWSVAKKDIPSFERYISQLKCYYFDYSSLLPE
SPYFYQLLGLNLMCLLAQNRLAEFHTELELLPAKELQENVYIRCPVALEQ
YLMEGNYNKVFLSKGNVPAESYHFFINILLDTLRDEVATCIEKSYDQISQ
KEAYRMLFFDKETDLLNYASKKNWKVESNRYVFRQDVQSKQELSSLKIIE
NCLGYAKELERIV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034268XLOC_034268Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00054348TCONS_00054348Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
IPR033464CSN8_PSD8_EIF3K
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 175..250
e-value: 2.6E-7
score: 30.1
IPR033464CSN8/PSMD8/EIF3KPFAMPF10075CSN8_PSD8_EIF3Kcoord: 106..239
e-value: 4.3E-31
score: 107.7

Blast
[Close]
BLAST of TCONS_00054348-protein vs. Swiss-Prot (Human)
Match: PSMD8 (26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=2)

HSP 1 Score: 296.204 bits (757), Expect = 3.010e-100
Identity = 151/265 (56.98%), Postives = 197/265 (74.34%), Query Frame = 0 
Query:    2 AALGPVITMYQTLVKEWSKKPVNLDNVGNMLTKMKLALMELQFMPTSGTTPSAQELIVARDVLEIGVQWSVAKKDIPSFERYISQLKCYYFDYSSLLPESPYFYQLLGLNLMCLLAQNRLAEFHTELELLPAKELQENVYIRCPVALEQYLMEGNYNKVFLSKGNVPAESYHFFINILLDTLRDEVATCIEKSYDQISQKEAYRMLFFDKETDLLNYASKKNWKVESNRYVFRQDVQSKQE---LSSLKIIENCLGYAKELERIV 263
            A L     MY+ L  EW++K  NL   G  L ++KL L+EL F+PT+GT  + Q+LI+ARD+LEIG QWS+ +KDIPSFERY++QLKCYYFDY   LPES Y +QLLGLNL+ LL+QNR+AEFHTELE LPAK++Q NVYI+ PV+LEQYLMEG+YNKVFL+KGN+PAESY FFI+ILLDT+RDE+A CIEK+Y++I   EA R+LFF+    + +YA K+ W +  N Y      Q K E   + S ++ +  + YA++LE IV
Sbjct:   86 AVLQAATGMYEQLKGEWNRKSPNLSKCGEELGRLKLVLLELNFLPTTGTKLTKQQLILARDILEIGAQWSILRKDIPSFERYMAQLKCYYFDYKEQLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKKRGWVLGPNNYYSFASQQQKPEDTTIPSTELAKQVIEYARQLEMIV 350
The following BLAST results are available for this feature:
BLAST of TCONS_00054348-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD83.010e-10056.9826S proteasome non-ATPase regulatory subunit 8 OS=... [more]
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