TCONS_00053959-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053959-protein
Unique NameTCONS_00053959-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053959-protein ID=TCONS_00053959-protein|Name=TCONS_00053959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=632bp
MLLQGQVMGEEDFHPFIEQCLPHVKSFGYAWFNLQAKKRKFYKKHEFRMS
TELLRQTKEELENQPYEEKQKWASRLLAKLRKDIKPECREEFINAVTGKS
SNTECVISNADQKGKMRRIDCLRQADKVWRLDLVMMILFHATPLESTDGE
RLGKIPRCKHKILCVNPAHICIVAKELDLFLSNYLPQREVVGEQPNILTT
GVFERKELERYSRESILYRQISKQLESPQSNSPYGSYSDVQVALASRPVP
IKARTHPYFPSYYRTAKDESIDESTWHSDNDSGVGTPTKLRACYPNSPTT
SSLLNSSCNSTQLSAALHPNYPPSNGINNTSSSSNLPPSTSTQFSQSYGA
VSDMQSSFTAVNSSSSVPYRSSYGRLQYTNDEIYQYQSSSYTQPFTRSQS
VVNYGPSIIPSKQRANTLPFEKMEQMNLYGSNNQGMENGVPSTTSYGASS
YGQMGSPDGTLRSSSLIKNEASIPSYASYQRQSMYNNYGSDTRVMDFNSS
CGSQISTASMSCQYTPQMSEDTATTPSNGPPTIQQQQSVISTQGSIDMSN
MSSTISDEEQNQQQNVQQNNVQQQHQQQQNYVENNGYPSISNLFAVAQQN
NNNNTLEENRYSMTAMTPNSQATQNTSSIQIQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034061XLOC_034061Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053959TCONS_00053959Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003619MAD_homology1_Dwarfin-type
IPR013019MAD_homology_MH1
IPR019548CTF/NFI_DNA-bd_N
IPR020604CTF/NFI_DNA-bd-dom
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005667transcription factor complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0007179transforming growth factor beta receptor signaling pathway
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0007179 transforming growth factor beta receptor signaling pathway
cellular_component GO:0005622 intracellular
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003619MAD homology 1, Dwarfin-typeSMARTSM00523dwAneu5coord: 68..177
e-value: 3.9E-24
score: 96.2
IPR003619MAD homology 1, Dwarfin-typePFAMPF03165MH1coord: 70..173
e-value: 1.2E-10
score: 41.4
IPR013019MAD homology, MH1GENE3D3.90.520.10coord: 43..214
e-value: 1.6E-7
score: 30.7
IPR013019MAD homology, MH1PROSITEPS51075MH1coord: 48..186
score: 8.526
IPR013019MAD homology, MH1SUPERFAMILY56366SMAD MH1 domaincoord: 62..172
IPR019548CTF transcription factor/nuclear factor 1, N-terminalPFAMPF10524NfI_DNAbd_pre-Ncoord: 10..46
e-value: 5.8E-22
score: 77.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..292
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 516..578
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 315..348
IPR020604CTF transcription factor/nuclear factor 1, DNA-binding domainPROSITEPS51080CTF_NFI_2coord: 2..196
score: 47.44

Blast
[Close]
BLAST of TCONS_00053959-protein vs. Swiss-Prot (Human)
Match: NFIC (Nuclear factor 1 C-type OS=Homo sapiens GN=NFIC PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 5.020e-82
Identity = 126/234 (53.85%), Postives = 162/234 (69.23%), Query Frame = 0 
Query:    8 MGEEDFHPFIEQCLPHVKSFGYAWFNLQAKKRKFYKKHEFRMSTELLRQTKEELENQPYEEKQKWASRLLAKLRKDIKPECREEFINAVTGKSSNTECVISNADQKGKMRRIDCLRQADKVWRLDLVMMILFHATPLESTDGERLGKIPRCKHKILCVNPAHICIVAKELDLFLSNYLPQREV---------VGE---------------QPNILTTGVFERKELERYSRESIL 217
            + +++FHPFIE  LPHV++F Y WFNLQA+KRK++KKHE RMS +  R  K+EL  +  E KQKWASRLLAKLRKDI+PECRE+F+ ++TGK +   CV+SN DQKGKMRRIDCLRQADKVWRLDLVM+ILF   PLESTDGERL K  +C H +LCV P HI +  KELDL+L+ ++ +R+          +G                Q + +T+GVF   EL + SR  ++
Sbjct:    8 LTQDEFHPFIEALLPHVRAFAYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEVKQKWASRLLAKLRKDIRPECREDFVLSITGKKAPG-CVLSNPDQKGKMRRIDCLRQADKVWRLDLVMVILFKGIPLESTDGERLVKAAQCGHPVLCVQPHHIGVAVKELDLYLAYFVRERDAEQSGSPRTGMGSDQEDSKPITLDTTDFQESFVTSGVFSVTELIQVSRTPVV 240
The following BLAST results are available for this feature:
BLAST of TCONS_00053959-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NFIC5.020e-8253.85Nuclear factor 1 C-type OS=Homo sapiens GN=NFIC PE... [more]
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