TCONS_00053934-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053934-protein
Unique NameTCONS_00053934-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length606

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053934-protein ID=TCONS_00053934-protein|Name=TCONS_00053934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=606bp
MSRKRTPVRSTGPVKGMSGSATKSIKPAWSKMLEPQDTNDLKFNNKSSFA
AYNDYSDDSDEDEGDGLYHKGFTQNIGDDRNKQGFSLRDTMSNLNVSSRS
KQSVNDFFDNTQQQMLQKPTSKYTRNPQHVSNSQQHQRPHKKRHQNIGPF
EPNIPPDLEKHIISGEYIDFAEIVMLLGYQKTVEDAFALMAKDILVWLDC
FMYYTSIVGSVAPGRIAGLMRYSRIIMWIYKESQDVTSWWRYDKAYRRLA
ALKHLQNWSEIDEELFGGATSEVFRQSLHCDECLTQDHVKNKCPFKKSNQ
DNGRARGPLSHGAKPEGAVSPRRMDVVEQALANPEKSARRPAEGLQLKFA
FGYHGYNACNNVFYTQSNEIVFHTAAIGIVYNQETHEQRFYLGHDDDILC
LTVHDEEDFIATGQIGRNPCTQVWDIVSLKCVAVLKGFHKRGIICVDFSG
DGDKLADVGLDDDHCICIWNWRKEEKLASTRGHKDVIYNLEWNPYDVNKL
VSVGVKHIKFWTLNGNKIEKRTTTFGKAGELTDMLCICHSPLEDVVYTGA
ASGEIYVWQXKMSCTQELRQEKFMSGKAVLIGSRFQLTKDLFMQCLLCFN
QKKRVL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_034049XLOC_034049Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053934TCONS_00053934Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR005108HELP
IPR017986WD40_repeat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 428..470
e-value: 0.13
score: 21.3
coord: 524..559
e-value: 23.0
score: 8.5
coord: 384..425
e-value: 3.4
score: 13.6
coord: 473..512
e-value: 0.54
score: 18.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 388..425
e-value: 0.12
score: 13.2
coord: 430..470
e-value: 0.0018
score: 19.0
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 354..472
e-value: 1.3E-18
score: 66.7
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 473..578
e-value: 4.8E-13
score: 48.4
IPR005108HELPPFAMPF03451HELPcoord: 332..382
e-value: 4.6E-15
score: 55.1
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 391..568
score: 11.207
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 353..564

Blast
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BLAST of TCONS_00053934-protein vs. Swiss-Prot (Human)
Match: EMAL6 (Echinoderm microtubule-associated protein-like 6 OS=Homo sapiens GN=EML6 PE=2 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 4.790e-78
Identity = 126/283 (44.52%), Postives = 186/283 (65.72%), Query Frame = 0 
Query:  336 KSARRPAEGLQLKFAFGYHGYNACNNVFYTQSNEIVFHTAAIGIVYNQETHEQRFYLGHDDDILCLTVHDEEDFIATGQIGRNPCTQVWDIVSLKCVAVLKGFHKRGIICVDFSGDGDKLADVGLDDDHCICIWNWRKEEKLASTRGHKDVIYNLEWNPYDVNKLVSVGVKHIKFWTLNGNKIEKRTTTFGKAGELTDMLCICHSPLEDVVYTGAASGEIYVWQXKMSCTQELRQEKFMSG---------KAVLIGSR---FQLTKDLFMQCLLCFNQKKRVL 606
            K  + P + L+L+F  GY GY+  NN+FYTQ+ E+V+H AA+ +VYN++ H QR YLGHDDDIL LT+H  +D++ATGQ+GR+    VWD  +LKC+++LKG H+RG+  +DFS DG  L  VGLDD H I  W+W+K EK+A+TRGHKD I+ ++ NP+ V+KLV+VG+KHIKFW   G     +  TFG  G+L  M+C+ +  +ED+V++GAA+G+I++W+  +     L+  K   G         K  + G +    +L  D+F +CL  +  K+  L
Sbjct:  668 KREKAPEDSLKLQFIHGYRGYDCRNNLFYTQAGEVVYHIAAVAVVYNRQQHSQRLYLGHDDDILSLTIHPVKDYVATGQVGRDAAIHVWDTQTLKCLSLLKGQHQRGVCALDFSADGKCLVSVGLDDFHSIVFWDWKKGEKIATTRGHKDKIFVVKCNPHHVDKLVTVGIKHIKFWQQAGGGFTSKRGTFGSVGKLETMMCVSYGRMEDLVFSGAATGDIFIWKDILL----LKTVKAHDGPVFAMYALDKGFVTGGKDGIVELWDDMFERCLKTYAIKRSAL 946

HSP 2 Score: 232.261 bits (591), Expect = 3.327e-65
Identity = 99/219 (45.21%), Postives = 150/219 (68.49%), Query Frame = 0 
Query:  341 PAEGLQLKFAFGYHGYNACNNVFYTQSNEIVFHTAAIGIVYNQETHEQRFYLGHDDDILCLTVHDEEDFIATGQIGRNPCTQVWDIVSLKCVAVLKGFHKRGIICVDFSGDGDKLADVGLDDDHCICIWNWRKEEKLASTRGHKDVIYNLEWNPYDVNKLVSVGVKHIKFWTLNGNKIEKRTTTFGKAGELTDMLCICHSPLEDVVYTGAASGEIYVWQ 559
            P   L+L++ +GY G+   NN++YT   E+V+  A +G+VYN   H Q+F+LGH+DDI+ L +H ++  +ATGQ+G+ P   +WD  +++ V++LK  H  G+ C+ F  DG +LA VGLD  + +CIW+WRK + LAS  GH D I+++ W+PY  N++VS GVKHIKFWTL GN +  +   FGK G+L  +LC+  +  ED+ Y+GA +G+IYVW+
Sbjct:    7 PRCQLRLEWVYGYRGHQCRNNLYYTAGKEVVYFVAGVGVVYNTREHSQKFFLGHNDDIISLALHPDKTLVATGQVGKEPYICIWDSYNVQTVSLLKDVHTHGVACLAFDSDGQRLASVGLDAKNTVCIWDWRKGKLLASATGHSDRIFDISWDPYQPNRVVSCGVKHIKFWTLCGNALTAKRGIFGKTGDLQTILCLACAK-EDITYSGALNGDIYVWK 224

HSP 3 Score: 178.718 bits (452), Expect = 3.643e-47
Identity = 99/264 (37.50%), Postives = 146/264 (55.30%), Query Frame = 0 
Query:  312 GAKPE---GAVSPRRMDVVEQALANPEK-------SARRPAEGLQLKFAFGYHGYNACNNVFYTQSN-EIVFHTAAIGIVYNQETHEQRFYLGHDDDILCLTVHDEEDF---IATGQIGRNPCTQVWDIVSLKCVAVLKGFHKRGIICVDFSGDGDKLADVGLDDDHCICIWNWRKEEKLASTRGHKDVIYNLEWNPYDVNKLVSVGVKHIKFWTLNGNKIEKRTTTFGKAG--ELTDMLCICHSPLEDVVYTGAASGEIYVWQ 559
            G KP      VS      V +A   PEK         ++  E L L   FGY G++  NN+ Y     +I+FHTAA GIV N  T  Q FYL H DDILCLTV+    +   +AT QIG  P   +WD ++   +++L+ FH +G+  ++FS  G  L  VG+D +H I +W W++  K+AS  GH + I+ +E+ P    + VSVGVKH+KFWTL G+ +  +    G  G  ++  ML +      ++ +TGA +G++YVW+
Sbjct: 1320 GTKPHQQLKEVSVEERPPVSRAAPQPEKLQKNNITKKKKLVEELALDHVFGYRGFDCRNNLHYLNDGADIIFHTAAAGIVQNLSTGSQSFYLEHTDDILCLTVNQHPKYRNVVATSQIGTTPSIHIWDAMTKHTLSMLRCFHSKGVNYINFSATGKLLVSVGVDPEHTITVWRWQEGAKVASRGGHLERIFVVEFRPDSDTQFVSVGVKHMKFWTLAGSALLYKKGVIGSLGAAKMQTMLSVAFGA-NNLTFTGAINGDVYVWK 1582
The following BLAST results are available for this feature:
BLAST of TCONS_00053934-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EMAL64.790e-7844.52Echinoderm microtubule-associated protein-like 6 O... [more]
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