TCONS_00053857-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053857-protein
Unique NameTCONS_00053857-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053857-protein ID=TCONS_00053857-protein|Name=TCONS_00053857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=300bp
MGDDNKRKLNLEDEMNRFEQEISGNLPPPPKMPKMPNMMGPPGFMGRPPM
PPPPFMNQNRNGSGGLPPMSFPPGPPPQMPPNMFGGPPGGLPPPPAMRGL
PVPPPMMVPPPMMPMPIPPMAMPSSAPGNNFGGSANNTSSNDNMSSSVSN
INNPTADNVVGGPGGGGGEKKKKDKKKTVVRVAGSSVWEDDSLLDWDPND
FRIFVGDLGNEVSDDHLLRAFSKYPSLNKSRVVRDKRSKKTKGYGFVSFK
DPQDYLKAMREMNGKYVGNRPIKLRKSNWKDRNIMTAKKKEKEKKKLGLR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033987XLOC_033987Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053857TCONS_00053857Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR034215RBM42_RRM
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableGENE3D3.30.70.330coord: 167..298
e-value: 2.2E-24
score: 85.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..93
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 202..275
e-value: 5.6E-22
score: 89.0
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 203..273
e-value: 1.2E-18
score: 66.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 201..279
score: 17.268
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 193..281
IPR034215RBM42, RNA recognition motifCDDcd12383RRM_RBM42coord: 195..277
e-value: 5.30403E-53
score: 169.326

Blast
[Close]
BLAST of TCONS_00053857-protein vs. Swiss-Prot (Human)
Match: RBM42 (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.792e-53
Identity = 88/122 (72.13%), Postives = 104/122 (85.25%), Query Frame = 0 
Query:  179 VVRVAGSSVWEDDSLLDWDPNDFRIFVGDLGNEVSDDHLLRAFSKYPSLNKSRVVRDKRSKKTKGYGFVSFKDPQDYLKAMREMNGKYVGNRPIKLRKSNWKDRNIMTAKKKEKEKKKLGLR 300
             +R A  S WED SLL+WD +DFRIF GDLGNEV+DD L RAFS++PS  K++V+RDKR+ KTKGYGFVSFKDP DY++AMREMNGKYVG+RPIKLRKS WKDRN+   +KK+KEKKKLGLR
Sbjct:  359 CIRTAAGSSWEDPSLLEWDADDFRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKDRNLDVVRKKQKEKKKLGLR 480
The following BLAST results are available for this feature:
BLAST of TCONS_00053857-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBM422.792e-5372.13RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
back to top