TCONS_00053848-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053848-protein
Unique Name	TCONS_00053848-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	425

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053848-protein ID=TCONS_00053848-protein|Name=TCONS_00053848-protein|organism=Clytia hemisphaerica|type=polypeptide|length=425bp
MVKMNLTTIFICLFWLLMVTWAQVDEEEVRASHQKYAEMMKHDGKKRVKV
ITQKNVKSLMKKNEILVVFFWVDNDKKLEKLNEQDMYFLETVAQSFELRK
VVISTCEIMANQEFASIAELRFSGMIKIFHKGKVQTYGGQRSPDVLIPFI
FKMLTPSVIQIKKKAEKKNFDDIDLVKVIAYVDKNSKEYKGFEEASYKYH
PLIPFYYVTDAKIAKVFHLKKKNSFQIIKPFEKSISFPAKGKLTYESIVK
FMNTNKQERLVKLRLENIHEIWAIDLKGYLVTIFANVKTQGGSNFFGKCK
KLSKQFEKNSNLTFVWIEAEPFPQMIDYWRKSFRIDPLKSNLGVVDIHTQ
KSTWFELAEGASDQEEFKSMTKWLSSVYDGQIEFVAMRPAEEVKKEMMEE
AEVKKRKLQEYSEEENEEDVEKDEL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033980	XLOC_033980	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053848	TCONS_00053848	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001393	Calsequestrin
IPR012336	Thioredoxin-like_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005509	calcium ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 390..425
None	No IPR available	PRINTS	PR00312	CALSEQUESTRN	coord: 125..154 score: 23.03 coord: 259..286 score: 38.64 coord: 328..356 score: 41.69 coord: 194..223 score: 35.76 coord: 34..57 score: 33.33
None	No IPR available	GENE3D	3.40.30.10		coord: 41..159 e-value: 9.6E-9 score: 35.0
None	No IPR available	GENE3D	3.40.30.10		coord: 259..397 e-value: 5.5E-29 score: 100.0
None	No IPR available	GENE3D	3.40.30.10		coord: 160..258 e-value: 1.6E-13 score: 50.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 403..425
None	No IPR available	CDD	cd02981	PDI_b_family	coord: 158..255 e-value: 1.89415E-9 score: 53.4954
IPR001393	Calsequestrin	PFAM	PF01216	Calsequestrin	coord: 8..383 e-value: 1.3E-51 score: 175.7
IPR012336	Thioredoxin-like fold	SUPERFAMILY	52833	Thioredoxin-like	coord: 260..377
IPR012336	Thioredoxin-like fold	SUPERFAMILY	52833	Thioredoxin-like	coord: 163..264
IPR012336	Thioredoxin-like fold	SUPERFAMILY	52833	Thioredoxin-like	coord: 47..162

Blast

[Close]

BLAST of TCONS_00053848-protein vs. Swiss-Prot (Human)
Match: CASQ1 (Calsequestrin-1 OS=Homo sapiens GN=CASQ1 PE=1 SV=3)

HSP 1 Score: 162.155 bits (409), Expect = 1.287e-45
Identity = 106/357 (29.69%), Postives = 184/357 (51.54%), Query Frame = 0

Query:   34 QKYAEMMKHDGKKRVKVITQKNVKSLMKKNEILVVFFW--VDNDKKLEKLNEQDMYFLETVAQSFELRKVVISTCEIMANQEFASIAELRFSGMIKIFHKGKVQTYGGQRSPDVLIPFIFKMLTPSVIQIKKKAEKKNFDDI-DLVKVIAYV-DKNSKEYKGFEEASYKYHPLIPFYYVTDAKIAKVFHLKKKNSFQIIKPF-EKSISFPAKGKLTYESIVKFMNTNKQERLVKLRLENIHEIWAIDLKGYLVTIFANVKTQGGSNFFGKCKKLSKQFEKNSNLTFVWIEAEPFPQMIDYWRKSFRIDPLKSNLGVVDIHTQKSTWFELAEGASDQEEFKS---MTKWLSSVYDGQI 382
            Q+  +  ++DG  RV  +  KN K++ KK E+L + +    ++DK  ++  E +   LE  AQ  E + V     +   +   A    L     + +F   +V  Y G+ S D ++ F+  +L   V  I+ + E + F++I D +K+I Y   K+S+ YK FE+A+ ++HP IPF+   D+K+AK   LK  N     + F E+ ++ P K   + E IV F+  +++  L KL+ E+++E W  D+ G  +  FA      G  F    K +++   +N +L+ +WI+ + FP ++ YW K+F ID     +GVV++    S W E+     D+E+  S   +  WL  V +G+I
Sbjct:   35 QEGLDFPEYDGVDRVINVNAKNYKNVFKKYEVLALLYHEPPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAVAKKLGLTEVDSMYVFKGDEVIEYDGEFSADTIVEFLLDVLEDPVELIEGERELQAFENIEDEIKLIGYFKSKDSEHYKAFEDAAEEFHPYIPFFATFDSKVAKKLTLKL-NEIDFYEAFMEEPVTIPDKPN-SEEEIVNFVEEHRRSTLRKLKPESMYETWEDDMDGIHIVAFAEEADPDGFEFLETLKAVAQDNTENPDLSIIWIDPDDFPLLVPYWEKTFDIDLSAPQIGVVNVTDADSVWMEM----DDEEDLPSAEELEDWLEDVLEGEI 385

The following BLAST results are available for this feature:

BLAST of TCONS_00053848-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053848-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CASQ1	1.287e-45	29.69	Calsequestrin-1 OS=Homo sapiens GN=CASQ1 PE=1 SV=3	[more]

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TCONS_00053848-protein (polypeptide) - C. hemisphaerica