TCONS_00053812-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00053812-protein
Unique Name	TCONS_00053812-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	821

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00053812-protein ID=TCONS_00053812-protein|Name=TCONS_00053812-protein|organism=Clytia hemisphaerica|type=polypeptide|length=821bp
LNFSYRRSTKGQQIPEKSSAVERKQIWRRDVLAAQSGINHRNKLLIVLFL
KLSYTNISELPPDLKWKRMFGLIYSIIQRNLEDMSVKAPLLNSITFPALE
PQSGIPRQAILKLPHTLNKGSPWKFEQAGDISKYLCQWLLVYTTQNPGSS
GKKSLFQNKSPNVSQTNTAVMEIDGSPCRDIFTVLNISKNYIKEHMLNLY
TFAVLKSWLEFALSQEDMTDCLTSTLPKFPTTKGTPKGASYSDSPLSAFG
ASQFYDVDSESSTESPSVSSSFASSPVFSQFDELTNEQFDRRRTFDQMSL
RSATPSFIATPRKTSQAFDTVSITSDIFSNASNLKNVAAKYCLRIILQSE
RGPLKDTDRAMVTASVVEAIQILDLLCKEECTFTQKVFNEIKKLYRRLEE
KPVAARRVLVALVQFYINHHEEMMIQVEEILEIYFKNIPKHLYTSQTTGF
EIYELCLKNKEFFKFHPEVLVKYVPNLFRFAAWWPCNFMEEICEILSLIL
NQSTAAEILHLILDLPCLTALLQLSHDGFIEDPVKLGERLKTDLPPYSKA
LFNFILRDKLMGVETIDKIPELHRLLGEFSQDPLVKYVTDILPPLLVTYM
SIIEELDSEEVYKKIFPILIERTYQLFPVDAEHGKILEIFGTEIKSIAEW
YPEVISLHSGEIISFLTLFRNSTSVQKSSNIVNAVLHAIGDSVSAMDNAI
LSSFYDTIEELAYEALNGMNSNKEYILSSMEILQSLLATISKIAAHAQEH
IQRAVVCLNKVVSFVADSPLFVNLKSYAQELTNMLNRPQVAPAILCKRSG
VVPWHLTGDSSLMLKIHVLSQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_033959	XLOC_033959	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00053812	TCONS_00053812	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR028222	AP5Z1
IPR011989	ARM-like
IPR016024	ARM-type_fold

Vocabulary: **Cellular Component**
Term	Definition
GO:0044599	AP-5 adaptor complex

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0044599	AP-5 adaptor complex
molecular_function	GO:0005488	binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028222	AP-5 complex subunit zeta-1	PFAM	PF14764	SPG48	coord: 363..479 e-value: 4.1E-27 score: 94.9
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 72..798 e-value: 6.4E-7 score: 26.8
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 361..770

Blast

[Close]

BLAST of TCONS_00053812-protein vs. Swiss-Prot (Human)
Match: AP5Z1 (AP-5 complex subunit zeta-1 OS=Homo sapiens GN=AP5Z1 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 4.027e-47
Identity = 139/547 (25.41%), Postives = 262/547 (47.90%), Query Frame = 0

Query:  305 PSFIATPRKTSQAFDTVSITSDIFSNA------SNLKNVAAKYCLRIILQSERGPLKDTDRAMVTASVVEAIQILDLLCKEECTFTQKVFNEIKKLYRRLEEKPVAARRVLVALVQFYINHHEEMMIQVEEILEIYFKNIPKHLYTSQTTGFEIYELCLKNKEFFKFHPEVLVKYVPNLFRFAAWWPCNFMEEICEILSLILNQSTAAEILHLILDLPCLTALLQL---SHDGFIEDP-----VKLGERLKTDLPPYSKALFNFILRDKLMGVETIDKIPELHRLLGEFSQDPLVKYVTDILPPLLVTYMSIIEELDSEEVYKKIFPILIERTYQLFPVDAEHGKILEIFGTEIKSIAEWYPEVISLHSGEIISFLTLFRNSTSVQKSSNIVNAVLHAIGDSVSAMDN-----AILSSFYDTIEELAYEALNGMNSNKEYILSSMEILQSLLATISKIAAHAQEHIQRAVVCLNKVVSFVADSPLFVN---------LKSYAQELTNMLNRPQVAPAILCKRSGVVP--WHLTGDSSLMLKIHVLSQ 821
            P  + T  ++ Q   T+S+ S   S          L+ VA +YC R+I QS R  L+  D  +  A +VEA+ +LD+LC+++ +F  +  + +K L+ R+   P A+ RVL+ L  F+++H E   +  E + +  F  IP   + S    FE  + C  N   F  H   L    PNLF+F AW       E   +L  +++  TA E+LH +LDLPCLTA+L L   S     E P     ++    L+    P  + LF ++LR K  G    +++  LH+LL   +    V      +P LL  + S + ++    +  ++  +L+ R+  L+P       +  +  ++  ++    P ++   + +++ FL    +   +   +++V +V+ AIG+ +S   +       ++ F++ +E L +E +     +        +++  L+ T++K+A+ +Q+ I RA + L+K+ + +A SP   +         +++ A EL  +L  P VA  +L   + V    +H   +++L L +  +S+
Sbjct:  258 PGTLDTDDRSEQEGSTLSVISATSSAGRLLPPRERLREVAFEYCQRLIEQSNRRALRKGDSDLQKACLVEAVLVLDVLCRQDPSFLYRSLSCLKALHGRVRGDP-ASVRVLLPLAHFFLSHGEAAAVDSEAVYQHLFTRIPVEQFHSPMLAFEFIQFCRDNLHLFSGHLSTLRLSFPNLFKFLAWNSPPLTSEFVALLPALVDAGTALEMLHALLDLPCLTAVLDLQLRSAPAASERPLWDTSLRAPSCLEAFRDPQFQGLFQYLLRPKASGA--TERLAPLHQLLQPMAGCARVAQCAQAVPTLLQAFFSAVTQVADGSLINQLALLLLGRSDSLYPAPGYAAGVHSVLSSQFLALCTLKPSLVVELARDLLEFLG---SVNGLCSRASLVTSVVWAIGEYLSVTYDRRCTVEQINKFFEALEALLFE-VTQCRPSAALPRCPPQVVTVLMTTLTKLASRSQDLIPRASLLLSKMRT-LAHSPATSSTHSEEGAEAIRTRATELLTLLKMPSVAQFVLTPSTEVCSPRYHRDANTALPLALRTVSR 796

The following BLAST results are available for this feature:

BLAST of TCONS_00053812-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00053812-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AP5Z1	4.027e-47	25.41	AP-5 complex subunit zeta-1 OS=Homo sapiens GN=AP5...	[more]

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TCONS_00053812-protein (polypeptide) - C. hemisphaerica