TCONS_00053692-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053692-protein
Unique NameTCONS_00053692-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length548

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053692-protein ID=TCONS_00053692-protein|Name=TCONS_00053692-protein|organism=Clytia hemisphaerica|type=polypeptide|length=548bp
MVADGTACSRCDGLVSLRPQKIKDLCIILNKMSKDTNEGNNNTTNGHKGE
ESDEKQVQPTSWTELEIVGSTRNLSPTLWTFTHLTALYLRDNGISRIPPE
VSRLKGLTKLDLSKNKIRSLPTEIGDMIELNDLNLSYNALRVLPNEIGRL
FKLKSLGLQGNPLPSEIMNLGLDNLLMYLLGNYTVCPRPPNREWLPVTQN
TTKNGSFTVMSYNVLCEKYTTRQLYGYCPQWALAWDYRKSAILKEILQFN
ADVLSLQEIGTEVFWNFFLPELKKNGYEGIFNPKSRAKTMSEEDRRYVDG
CAIFWNSAKFTLLKEHLVEFNQLAAANCENADDMLNRVMQRDNICMMALL
ETTEPVAELNNSKGKLVVTNAHIHWDPEFKDVKVIQSVMLMRELKNFLEE
SNGGKAGLKTPFVICADMNSLVDSGAIEYVEKGKIPINHPDFKTMKYGGF
LSKHTDKEKKNGEMVTHPFKLSRVAKENELPFTNYTYDFEGVLDYIFYTK
DELTILGELGPVNLEYLKKNKVIGFPHPHFPSDHICLVVEFDFKLPSR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033862XLOC_033862Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053692TCONS_00053692Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR005135Endo/exonuclease/phosphatase
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 127..150
e-value: 0.78
score: 18.8
coord: 81..103
e-value: 28.0
score: 9.6
coord: 104..126
e-value: 1.9
score: 17.5
IPR005135Endonuclease/exonuclease/phosphatasePFAMPF03372Exo_endo_phoscoord: 210..534
e-value: 1.9E-14
score: 53.7
IPR005135Endonuclease/exonuclease/phosphataseGENE3D3.60.10.10coord: 204..545
e-value: 2.7E-48
score: 164.2
IPR005135Endonuclease/exonuclease/phosphataseSUPERFAMILY56219DNase I-likecoord: 199..545
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 28..203
e-value: 2.0E-23
score: 81.9
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 69..175
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 83..140
e-value: 3.2E-10
score: 39.5
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 106..127
score: 7.466
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 83..104
score: 7.227
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 152..174
score: 5.371
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 129..150
score: 6.826
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..61
NoneNo IPR availableCDDcd09097Deadenylase_CCR4coord: 209..543
e-value: 3.87186E-172
score: 492.203

Blast
[Close]
BLAST of TCONS_00053692-protein vs. Swiss-Prot (Human)
Match: CNOT6 (CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2)

HSP 1 Score: 514.998 bits (1325), Expect = 1.026e-178
Identity = 256/517 (49.52%), Postives = 353/517 (68.28%), Query Frame = 0 
Query:   60 TSWTELEIVGSTRNLSPTLWTFTHLTALYLRDNGISRIPPEVSRLKGLTKLDLSKNKIRSLPTEIGDMIELNDLNLSYNALRVLPNEIGRLFKLKSLGLQGNPLPSEIMNL-----GLDNLLMYLLGNYT------VCPRPPNREWLPVTQ--NTTKNGSFTVMSYNVLCEKYTTRQLYGYCPQWALAWDYRKSAILKEILQFNADVLSLQEIGTEVFWNFFLPELKKNGYEGIFNPKSRAKTMSEEDRRYVDGCAIFWNSAKFTLLKEHLVEFNQLAAANCENADDMLNRVMQRDNICMMALLETTEPVAELNNSKGKL-------VVTNAHIHWDPEFKDVKVIQSVMLMRELKNFLEESNG-------GKAGLKTPFVICADMNSLVDSGAIEYVEKGKIPINHPDFKTMKYGGFL---SKHTDKEKKNGEMVTHPFKLSRVAKENELPFTNYTYDFEGVLDYIFYTKDELTILGELGPVNLEYLKKNKVIGFPHPHFPSDHICLVVEFDFKLP 546
            + W ELEI G  R+LS +LW+ THLTAL+L DN +SRIP ++++L  L  LDLS NKIRSLP E+G+M+ L +L+L+ N LRVLP E+G+LF+L++LGL+GNPL  +I+NL     G   LL YLL N +         +PP R W+ + +   T     F+VM YNVLC+KY TRQLYGYCP WAL WDYRK AI++EIL  NAD++SLQE+ TE +++FFL ELK+ GY G F+PKSRA+TMSE++R++VDGCAIF+ + KFTL+++H VEFNQLA AN E ++ MLNRVM +DNI +  LLE  +   E+ + K  L       +V NAH+HWDPE+ DVK++Q++M + E+KN +++++        G+ G   P V+CAD+NSL DSG +EY+  G +  NH DFK ++Y   L   S H      NG  +TH FKL    +   +P+TNYT+DF+G++DYIFY+K +L  LG LGP++  +L +N + G PHP  PSDH  L  + +  LP
Sbjct:   29 SHWAELEISGKVRSLSASLWSLTHLTALHLSDNSLSRIPSDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELHLNNNLLRVLPFELGKLFQLQTLGLKGNPLTQDILNLYQEPDGTRRLLNYLLDNLSGTAKRITTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLLELRKESIEMPSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFG-TIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSCHGKNGTTNGR-ITHGFKLQSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQLELLLP 543
The following BLAST results are available for this feature:
BLAST of TCONS_00053692-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CNOT61.026e-17849.52CCR4-NOT transcription complex subunit 6 OS=Homo s... [more]
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