TCONS_00053579-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00053579-protein
Unique NameTCONS_00053579-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length410

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00053579-protein ID=TCONS_00053579-protein|Name=TCONS_00053579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MYENCLKKFYKSYNVEVMFYLARAYYKAGRLEDCKRLLLKTRHVAPHNTL
LMFNLSLVQQRLATGVLRNEKSLLKAVLSAVADLQLAQRNFEYLSKHGDR
MRFDLAQARNEAGRCSDLLSQAQYHVQRARRIDEEEKETRKKQEEERELF
RKKHDQEQQRIKEKVEEDRQKMLEKRQQFKEQNKQKLVFDPVEIERKERA
RSKKSKKAELDDFVNDDSSDDDRPKKKKKAVEYDENGDPIKPKRQRKTKE
PKERKPKKSKEAKEPKLSKKQQQKVKSKAFLSSGDDTSSSDNNDDDKPTK
STASFKAALAAKDSGDSSSSNSDDDVDVSDQNMSVDDQSSSGAEEKPTTS
TATSVKKKKLAAIIASDEDSEDDMKNNILASSGGSDADDDAPKVTKKKRV
IASSDSEDDE
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_033812XLOC_033812Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00053579TCONS_00053579Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 126..185
NoneNo IPR availableGENE3D1.25.40.120coord: 1..188
e-value: 8.2E-11
score: 41.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 197..410
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..162
IPR011990Tetratricopeptide-like helical domainSUPERFAMILY48452TPR-likecoord: 2..61

Blast
[Close]
BLAST of TCONS_00053579-protein vs. Swiss-Prot (Human)
Match: CTR9 (RNA polymerase-associated protein CTR9 homolog OS=Homo sapiens GN=CTR9 PE=1 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 7.282e-71
Identity = 129/229 (56.33%), Postives = 168/229 (73.36%), Query Frame = 0 
Query:    1 MYENCLKKFYKSYNVEVMFYLARAYYKAGRLEDCKRLLLKTRHVAPHNTLLMFNLSLVQQRLATGVLRNEKSLLKAVLSAVADLQLAQRNFEYLSKHGDRMRFDLAQARNEAGRCSDLLSQAQYHVQRARRIDEEEKETRKKQEEERELFRKKHDQEQQRIKEKVEEDRQKMLEKRQQFKEQNKQKLVFDPVEIERKE-----RARSKKSKKAELDDFVNDDSSDDDRP 224
            MYENCL+KFYK  N EV+ YLARA +K G+L++CK+ LLK RHVAP +T+LMFN++LV QRLAT VL++EKS LK VL+AV +L+LA R F YLSK GD+MRFDLA A  EA +CSDLLSQAQYHV RAR+ DEEE+E R KQE+E+EL R+K  +EQ+  + + +E+++K+LE+R Q+ E+ K  L+F       KE         +  K  E D+FVNDD +DDD P
Sbjct:  703 MYENCLRKFYKHQNTEVVLYLARALFKCGKLQECKQTLLKARHVAPSDTVLMFNVALVLQRLATSVLKDEKSNLKEVLNAVKELELAHRYFSYLSKVGDKMRFDLALAATEARQCSDLLSQAQYHVARARKQDEEERELRAKQEQEKELLRQKLLKEQEEKRLREKEEQKKLLEQRAQYVEKTKNILMFTGETEATKEKKRGGGGGRRSKKGGEFDEFVNDD-TDDDLP 930
The following BLAST results are available for this feature:
BLAST of TCONS_00053579-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTR97.282e-7156.33RNA polymerase-associated protein CTR9 homolog OS=... [more]
back to top