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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00053541-protein ID=TCONS_00053541-protein|Name=TCONS_00053541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=833bp
MDPFSMQDNEDQEADRVILNVGGVHFETYVTTLQNIADTRLAWLIENVEE
ETLRKREFFFDRHPGAFVHILNFYRTGKLHTPTDLCGPAFEEELQFWGID
EKQMEPCCWETFTKHREAESNLRTFEGPGFEDLQVTRRRKYSNFNSHDDE
SFMKRNMRQIWDLMNDPHSSELAKRFSLLSCGMIIISLSVYCLLTMRSLR
EDSILKWINKICLVFFTIEFILRVIVCPRKIQFIKDYKNWIDFLSLIPSF
LMIAFPGSNWIYNLVIIRLLRVFKFFKLSYGLQVLLHTLKASSYELTLLL
LVLLIPLVVFSSLVYAFEFNMTDGETDFDSIPKTFWWTIVTMTTVGYGDM
APKTWIGQVVGSICAIISVLIIALPISVIGNNFNLYYAHVRARLKLPKKN
RHLLQGRLRGLLKQPAMLSSRDRDRKNITRRNGGNSLSMPPAGNGRLTVD
TLSPSPNFMLKRRGAAQTTSQISLSSSNESIANDEKQETFVKIDSNSPKT
STDESTPMINERRSRQCSLEVNHVTKENDRRSPNTRRRRLNTQEEAHNHF
PVNGRGSEVGIRYSTEDINDNLSGSSDSIILPSVSLTKEELENHFKNAYS
QNNENVTESGDENDDQFSLSPTKNLLHIVGNNDEPNIRRESMKRMTTVDY
NQNTKNTKERLRSNTLNSDDMNHKEKLRKQNTIASSSPGGLLRKISSPPL
FLNHLLGNGDGGAERRKNSLDRDKIQRSSSKELNGEKPAQNNVNHNSLED
HMDGEKLHSKNTGTENCIPASRPYKRPLQRSATDHNFYVDQNHRDGDQKH
HLPNFSLSIDNISLNKYKLTDEERKMLLRESGV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0051260 | protein homooligomerization |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005515 | protein binding |
| GO:0005216 | ion channel activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0051260 |
protein homooligomerization |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR028325 | Voltage-gated potassium channel | PRINTS | PR00169 | KCHANNEL | coord: 167..195
score: 33.88
coord: 207..230
score: 34.75
coord: 266..292
score: 47.58
coord: 233..253
score: 32.7
coord: 328..350
score: 72.75
coord: 357..383
score: 55.29
coord: 57..76
score: 59.54
coord: 295..318
score: 43.6 |
| IPR003968 | Potassium channel, voltage dependent, Kv | PRINTS | PR01491 | KVCHANNEL | coord: 368..379
score: 62.29
coord: 57..67
score: 67.88
coord: 271..279
score: 42.78
coord: 295..309
score: 37.78 |
| IPR003974 | Potassium channel, voltage dependent, Kv3 | PRINTS | PR01498 | SHAWCHANNEL | coord: 73..88
score: 76.39
coord: 393..407
score: 40.37
coord: 91..112
score: 68.43
coord: 58..71
score: 73.02
coord: 164..176
score: 37.61 |
| IPR000210 | BTB/POZ domain | SMART | SM00225 | BTB_4 | coord: 15..115
e-value: 4.4E-10
score: 49.5 |
| None | No IPR available | GENE3D | 3.30.710.10 | | coord: 14..114
e-value: 1.8E-30
score: 104.5 |
| None | No IPR available | GENE3D | 1.10.287.70 | | coord: 295..347
e-value: 1.5E-14
score: 53.4 |
| None | No IPR available | GENE3D | 1.20.120.350 | | coord: 172..294
e-value: 3.1E-22
score: 78.2 |
| None | No IPR available | GENE3D | 1.20.5.110 | | coord: 349..385
e-value: 2.6E-12
score: 45.7 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 641..692 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 415..557 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 706..780 |
| None | No IPR available | SUPERFAMILY | 81324 | Voltage-gated potassium channels | coord: 173..384 |
| IPR003131 | Potassium channel tetramerisation-type BTB domain | PFAM | PF02214 | BTB_2 | coord: 17..107
e-value: 7.4E-27
score: 93.4 |
| IPR005821 | Ion transport domain | PFAM | PF00520 | Ion_trans | coord: 176..389
e-value: 3.6E-38
score: 131.1 |
| IPR011333 | SKP1/BTB/POZ domain | SUPERFAMILY | 54695 | POZ domain | coord: 15..113 |
Blast
BLAST of TCONS_00053541-protein vs. Swiss-Prot (Human)
Match: KCNC1 (Potassium voltage-gated channel subfamily C member 1 OS=Homo sapiens GN=KCNC1 PE=1 SV=1) HSP 1 Score: 333.183 bits (853), Expect = 4.351e-105 Identity = 175/447 (39.15%), Postives = 260/447 (58.17%), Query Frame = 0
Query: 9 NEDQEADRVILNVGGVHFETYVTTLQNIADTRLAWLIENVEEETL----RKREFFFDRHPGAFVHILNFYRTGKLHTPTDLCGPAFEEELQFWGIDEKQMEPCCWETFTKHREAESNLRTFEGP-------------------GFEDLQVTRRRKYSNFNSHDDESFMKRNMRQIWDLMNDPHSSELAKRFSLLSCGMIIISLSVYCLLT---------------------MRSLRE---DSILKWINKICLVFFTIEFILRVIVCPRKIQFIKDYKNWIDFLSLIPSFLMIAFPG------SNWIYNLVIIRLLRVFKFFKLS---YGLQVLLHTLKASSYELTLLLLVLLIPLVVFSSLVYAFEF-------NMTDGETDFDSIPKTFWWTIVTMTTVGYGDMAPKTWIGQVVGSICAIISVLIIALPISVIGNNFNLYYAHVRA 392
+ E++R+++NVGG +TY +TL+ + TRLAWL E R EFFFDRHPG F HILN+YRTGKLH P D+CGP +EEEL FWGIDE +EPCCW T+ +HR+AE L +F G G ++L++T+R S+ F +R +IW L DP+SS A+ + S I++S++ +CL T +R RE ++ L +I +C+V+FT EF++RVI CP K++FIK+ N IDF++++P +L + G + + L ++R +R+ + FKL+ GL+VL HTL+AS+ E LL++ L + +++F++++Y E T F +IP FWW +VTMTT+GYGDM P+TW G +VG++CA+ VL IA+P+ VI NNF +YY+ A
Sbjct: 2 GQGDESERIVINVGGTRHQTYRSTLRTLPGTRLAWLAEPDAHSHFDYDPRADEFFFDRHPGVFAHILNYYRTGKLHCPADVCGPLYEEELAFWGIDETDVEPCCWMTYRQHRDAEEALDSFGGAPLDNSADDADADGPGDSGDGEDELEMTKRLALSDSPDGRPGGFWRRWQPRIWALFEDPYSSRYARYVAFASLFFILVSITTFCLETHERFNPIVNKTEIENVRNGTQVRYYREAETEAFLTYIEGVCVVWFTFEFLMRVIFCPNKVEFIKNSLNIIDFVAILPFYLEVGLSGLSSKAAKDVLGFLRVVRFVRILRIFKLTRHFVGLRVLGHTLRASTNEFLLLIIFLALGVLIFATMIYYAERIGAQPNDPSASEHTHFKNIPIGFWWAVVTMTTLGYGDMYPQTWSGMLVGALCALAGVLTIAMPVPVIVNNFGMYYSLAMA 448
The following BLAST results are available for this feature:
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